Similar regions between promoters of ywfM

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTTCGCTTTATTGACGGAATTAAAAGCGTTAAGCACCCATCTTTATTCAGCTGGACTGTC hal ...................TTAAAAATGGCAAACATTCATCT.................. ste ..............................AGGCGCCCATCTTTTTTC............ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >> sub CATTGATGAGGAAATGGAATTTGAGAAAAACCTCGTCCGGATGGCTGAGCGGA-----AT hal ..................................GTACGGATCGTTGGGCGGATAGGGAT ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]]]]]] sub GCAAAGGTATTTGGGTGAACGTTCTTCGCATGCCGGCTGTATATGCCGGCATGCATTTTT hal CCAAACGTATACGG.............................................. ste ........................TCCGCGTGGCGATGATCGGAGCTGGTTTTTATTTTA -180 -170 -160 -150 -140 -130 sub TATCTCAAGCGGCATTTTACCTCAA-TAATCTTATTTTCAGATAAGTCCTTCTTACATAC hal .........................................................TAA ste CCACACTTGCGCCCTTGTTCATTACCTAATATTATGCGCAAAT................. -120 -110 -100 -90 -80 -70 sub AGATAACCACGACAAAAAGAAAAACGATAAAATGACATCAG---CATCCATATTAAAGGG hal AAATAAGCAC.....AAAAAAGATCTTAAAAATGGCA--AA---CATTCATCTAAAA... ste ............................AAAATGAGATGGGGCGCAAGCATATGAAGAGG -60 -50 -40 -30 -20 -10 sub GAGAGGCAG hal ......... ste GAG...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...