Similar regions between promoters of ywqB

sub TTTCCTTCGTCGTCATCTCAGATGACTGCTCACCAATTTCATGTGCATGCATCAAAATTT hal .......................................................AATTT ste ............................................................ -300 -290 -280 -270 -260 -250 sub TCAGAAATTCTTCTTGATTCAATTTCTTT--TCACTCATCTTTTTTTTCCTTTCAGCTTC hal TAAAAAA.........ATTCCCCTTCTTCACTCCCTTAGCCTCCCTTTCATTTCTACATC ste ...................CATATTCGAT--GCAC-CTGCTTTCTTTTCCATT....... -240 -230 -220 -210 -200 -190 sub CATTAAGTTGAAAACACGATTATTATATGATGCTGGTTATCAATTTGCAATCTCTAATAC hal AGACAGGTTACAA.....ATTTCTACATCAGACAGGTTA..................... ste ....................TATAATAGGATGAT.......................... -180 -170 -160 -150 -140 -130 sub ATCATTCGA--CACATCCTATTTTTTATGTCCTTTTTTAGGAAAAACTTTTTAAGGCCGA hal ..............................CCTTTTTTATCAATAA.............. ste ...ATTCGATGCACCTGCTTTCTTTTATGTCCTTT......................... -120 -110 -100 -90 -80 -70 sub TGTGTTGCGATATAATAGAGAAATTGGATCTTT-TTATTACGTGACTCGGTTAGGAGCGA hal ..............ATAAAGAAAT.................................... ste .....................ATTTGGACTTTTCTTATTAC................... -60 -50 -40 -30 -20 -10 sub TAATC hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...