Similar regions between promoters of ywrD
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AATTCTGCCTTCTTCATGCAAAATCGTGAGAATTTGTTTATCAGTCTCATCAAGTACAAG hal .............................GAAATTTTTTATCTGTTT............. ste .................................................TCAAGTACATC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTTGGGGATTTGATATTCATGACTCAATTGCTCCACCTGCTTTCGTAGCCTTTTAGCAAT hal ...........................................................T ste TTTCGG...........................................CGTTTGTGAAA -240 -230 -220 -210 -200 -190 sub CATTTTATCATAAAAGTTACGTATAGAAATAATAATTTTTCATTTGTTTTCGAAATGAAT hal CATTAT-TAATGAACTATTAATGTACAAATGA-AATTTTTTATCTGTTTTCTA....... ste CGTTTTATTCTTCACTTAACG-AAAGAAA.AATATTCTTTCATTTTTTAGGAACAAGGAT -180 -170 -160 -150 -140 -130 sub GCGAAAATATCTTATTATTTGCGAAAAGAAGAAAGTTCGTCAGTTTTTCTGCCGGATCAG hal ..............................GAAAGTGGGAGGCTTTTTCTGC........ ste GGAAATA..................................................... -120 -110 -100 -90 -80 -70 sub TAGATGTGAAAAATCAGGCTCCCTATACTGAAGAAAATTTCTTAAAAAAGGGGACTTGTG hal .......................................TTTTTAAAAAGGGAGCTGGT. ste ............................................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...