Similar regions between promoters of yxaA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<< sub CAGACCTGAAACGATCCGCATTCTCAGCTCGTATGCGACACGAACTCCGGTT--GACGCT hal ............................................................ ste ...................ATTGTCA--TCGTTTGTGCCAAGACAGCCGTTTCCGATGAT -300 -290 -280 -270 -260 -250 <<<<<<<< <<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTGAGAG-CCA---TTTTGCGGGATACAACAGGTCTTTGGAGTCTAGCATACACTCACC hal ..................................TTTTTGGAGT................ ste TTTTCGTTTCCAAGGTTTGGATGGAGACAAAAG........................... -240 -230 -220 -210 -200 -190 sub TTCCTCACTCAAGGAGTATACTTGTATACAAGTATGATAACGTGAATATTTCTTTTATGC hal ......AGTAAGGGAGTAAACATGGAAGAACGTCTAA....................... ste ............................CAAGTATGTTGGCG........TCGTTTGTGC -180 -170 -160 -150 -140 -130 sub AAACACTTTCATTTCTAATTTTTATTTAAATTTTTACCATATTGCATGGTATGTATTTCC hal ..............................TTTTTTCATTGTTGGAT............. ste CAAGACAGCCGTTTCCGATGATTTTT.................................. -120 -110 -100 -90 -80 -70 sub AGATCAATTATGGTACATTGGAGATCAATAGGTTAAGTGAATCATGTTTTGAAAGAGGCG hal ............GTTAATGGTTGAACAAAAGATCAAGGGAA................... ste ........................................................GGCG -60 -50 -40 -30 -20 -10 sub ATTTGG hal ...... ste ATTTG. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...