Similar regions between promoters of yycF
sub AGGGAGAACCGGCCCTGCGGCCGGTTCAAAGAAGAA-GACGTCATTGATAAAGACGCACT hal ............................................................ ste .................CGGACCGTTCGCAAACGAACGTCGTC................. -300 -290 -280 -270 -260 -250 sub CCGGTGAGGGGAGGTTTCAATAAAGTTATCTTTTTTAAAAAAAGTTGACCAGCATGACAA hal ...GGGAGCATATGTTACAATA.............................GAATGACTA ste .................................................CAAAATGGCAA -240 -230 -220 -210 -200 -190 sub TAGATAAACAACTGGCGATAAAGGTGAAACATGTGTTTTTTTTCTAAACCTTTATTTTTT hal TAGTTTA..................GGAGCATATGTTACAATACTAAACCATTATTCTTA ste TCGGCAAA.AAATGGCAAT--CGGCAAAGGATGATTTCATGTTCATAACATTTTTTTCTT -180 -170 -160 -150 -140 -130 sub TTATCTTTTGACCTTAAACCGTTATAATAGACAAGGACCCATTCTTTACATGGGCCATAA hal AGATAGATTTAACTTCGACAG.........ACAACGACCCTCGCTTTAC........... ste TGATC....................................TTCATAACATGGTAAATTA -120 -110 -100 -90 -80 -70 sub GTGATGAAACGAATGTTATATAGATGAAATGAAGTCATTCGGCAGGAGGAAAATCAAAAT hal ............................................................ ste GTAATGATAGGATT.............................................. -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...