We scaned AraR binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| AraR | araA | Bsu | -89..-104 | AATTGTTCGTACAAAA | 15.7 |
|---|
| AraR | araA | Sau | -216..-231 | ATTTGAAAGTACCTTA | 9.1 |
|---|
| AraR | araA | Sty | -78..-93 | AAATTTTCGTGCTCAT | 7.3 |
|---|
| AraR | araA | Nos | -94..-109 | ATTTTTCCGTTAATAT | 8.3 |
|---|
| AraR | araA | Tma | -46..-61 | AATGGTACGTACTTTT | 14.1 |
|---|
| AraR | araE | Bsu | -93..-108 | ATTTGTACGTACTAAT | 18.7 |
|---|
| AraR | araE | Bha | -229..-244 | ATTTGTGCGTTTAAGT | 9.4 |
|---|
| AraR | araE | Cac | -44..-59 | ATATGTACGTATATAT | 14.5 |
|---|
| AraR | araE | Lla | -156..-171 | ATTTGTTGGTATTAGA | 8.6 |
|---|
| AraR | araE | Spy | -63..-78 | ATTTTTTCGCAAAAAT | 7.8 |
|---|
| AraR | araE | Spn | -249..-264 | TGCTGTCCGTATTTTT | 7.1 |
|---|
| AraR | araE | Sau | -191..-206 | AATACTACGTATTAAC | 9.2 |
|---|
| AraR | araE | Lin | -88..-103 | AATTTTTCGTAAAAAT | 10.3 |
|---|
| AraR | araE | Mge | -241..-256 | ATTTTTGGGTATCTAT | 7.6 |
|---|
| AraR | araE | Cgl | -5..-20 | AGTTTTACTTACCTTT | 7.4 |
|---|
| AraR | araE | Mtu | -251..-266 | ATTTGGCCGGACCAGT | 9.3 |
|---|
| AraR | araE | Eco | -162..-177 | ATTTGTAGGGACATTA | 9.2 |
|---|
| AraR | araE | EcZ | -172..-187 | AATTTTACGTATCTGA | 9.1 |
|---|
| AraR | araE | Ecs | -162..-177 | ATTTGTAGGGACATTA | 9.2 |
|---|
| AraR | araE | Ype | -89..-104 | AATTGTAAGTATATAG | 10.6 |
|---|
| AraR | araE | Sty | -19..-34 | AAATGTGCGTGTAAAT | 8.6 |
|---|
| AraR | araE | Vch | -147..-162 | ATGGGTACGCATTCAT | 8.7 |
|---|
| AraR | araE | Pae | -43..-58 | AATTGCCCGTACCGAT | 12.6 |
|---|
| AraR | araE | Cje | -132..-147 | AATTCTACTTATAAAA | 8.2 |
|---|
| AraR | araE | Bme | -28..-43 | AAATGACCGCACCTAT | 8.5 |
|---|
| AraR | araE | Mlo | -132..-147 | ATTGGCTCGTCTTTAT | 7.7 |
|---|
| AraR | araE | Rpr | -200..-215 | AATATAACGTATAATT | 7.5 |
|---|
| AraR | araE | Rco | -269..-284 | ATTTATTAGTATTTTT | 7.6 |
|---|
| AraR | araE | Nos | -84..-99 | AATTATACGGATTTAA | 8.9 |
|---|
| AraR | araE | Fnu | -87..-102 | ATTTGTACCTACTTTT | 13.6 |
|---|
| AraR | araR | Bsu | -32..-47 | ATTTGTACGTACTAAT | 18.7 |
|---|
| AraR | araR | Bha | -20..-35 | ATTTGTACGTATAAGT | 14.8 |
|---|
| AraR | araR | Cac | -230..-245 | ATTTGTACTTATAAAT | 13.8 |
|---|
| AraR | araR | Lla | -52..-67 | ATTTGTAAATAAAAAT | 8.2 |
|---|
| AraR | araR | Spy | -67..-82 | ATTAGTCCTCACATTT | 8.6 |
|---|
| AraR | araR | Spn | -65..-80 | TTTTGTAAGTAGATAT | 8.9 |
|---|
| AraR | araR | Sau | -174..-189 | AATTGTGTGTAAAATT | 7.6 |
|---|
| AraR | araR | Lin | -25..-40 | ATCTGTCCGCGCTTTT | 7.7 |
|---|
| AraR | araR | Cgl | -37..-52 | ATTCGTTCGACTTTAT | 7.7 |
|---|
| AraR | araR | Eco | -37..-52 | ATGTGTCCGTGTTAAA | 9.5 |
|---|
| AraR | araR | Ype | -152..-167 | ATTAGTCGGTACGCAG | 8.3 |
|---|
| AraR | araR | Sty | -112..-127 | ATTTGGCCGCTCTTTT | 7.7 |
|---|
| AraR | araR | Hin | -90..-105 | ATTTTTTCGTATTATT | 11.3 |
|---|
| AraR | araR | Pmu | -8..-23 | TTTTCTCCATACAAAT | 7.7 |
|---|
| AraR | araR | Rso | -134..-149 | CATTGTCCGTGTCAAT | 10.3 |
|---|
| AraR | araR | Mlo | -102..-117 | GATTGTTCGTACTCAA | 12.6 |
|---|
position : counted from translation start site.