We scaned ComA binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| ComA | comFA | Rco | -132..-146 | GGCGGGAGTCCAAAA | 10.3 |
|---|
| ComA | rapC | Bsu | -90..-104 | TGCGTGCTCCCGAAA | 19.4 |
|---|
| ComA | rapC | Pae | -176..-190 | CGCGGGTTCACGAAT | 10.4 |
|---|
| ComA | rapC | Sme | -167..-181 | TGCATGCCGCCGAAG | 13.4 |
|---|
| ComA | rapC | Mlo | -67..-81 | TCCTGGTCGCCGCAA | 13.6 |
|---|
| ComA | rapC | Ccr | -21..-35 | TGCGGACCGCCTCGA | 11.4 |
|---|
| ComA | rapC | Ctr | -159..-173 | TGCGATACACTGCAA | 11.4 |
|---|
| ComA | rapC | Nos | -242..-256 | TGCGGTAAGTCTCAA | 12.1 |
|---|
| ComA | rapE | Bsu | -90..-104 | TGCGTGCTCCCGAAA | 19.4 |
|---|
| ComA | rapE | Pae | -176..-190 | CGCGGGTTCACGAAT | 10.4 |
|---|
| ComA | rapE | Sme | -167..-181 | TGCATGCCGCCGAAG | 13.4 |
|---|
| ComA | rapE | Mlo | -67..-81 | TCCTGGTCGCCGCAA | 13.6 |
|---|
| ComA | rapE | Ccr | -21..-35 | TGCGGACCGCCTCGA | 11.4 |
|---|
| ComA | rapE | Ctr | -159..-173 | TGCGATACACTGCAA | 11.4 |
|---|
| ComA | rapE | Nos | -242..-256 | TGCGGTAAGTCTCAA | 12.1 |
|---|
| ComA | srfAA | Pae | -134..-148 | TGCGGGATGACGCTG | 13 |
|---|
| ComA | srfAA | Atu | -231..-245 | CGCGTGAAGCTGACA | 10.5 |
|---|
| ComA | srfAA | Mlo | -147..-161 | GTCGGGTTGCCGACA | 11.7 |
|---|
position : counted from translation start site.