Transcription factor: CcpC

Factor type LysR family
SWISS-PROT O34827
SubtiList BG13297
Consensus seq.
Comment carbon catabolite and anaerobic repression of citB and citZ
Link toPhylogenetic profile , Weight matrix & Motif alignment

Regulated
gene
Operon Sigma Regulation Absolute position Location Binding seq.(cis-element) Exp. Reference Year
ccpC ND ND Negative 1485309..1485333 ND GGGAGATAAGAAAAACTTATTGATA
GS, FT Kim, H. J., et al. 2002
citB ND ND Negative 1925746..1925769 -75:-52 TCATAAGTCGAACTTATTGTATTT
GS, FT Jourlin-Castelli, C., et al. 2000
citB ND ND Negative 1925781..1925799 -35:-22 TGATATTTACTTATGTATG
GS, FT Jourlin-Castelli, C., et al. 2000
citZ citZC ND Negative ND -14:+6 ND
PF, GS, FT Kim, H. J., et al. 2003
citZ citZC ND Negative ND +16:+36 ND
PF, GS, FT Kim, H. J., et al. 2003
citZ ND ND Negative 2981498..2981513 -11:+5 ATAATGAGAATAGGCT
GS, FT Jourlin-Castelli, C., et al. 2000
citZ ND ND Negative 2981459..2981482 +21:+44 TTATAAAAATTTGTTATGTTCTTT
GS, FT Jourlin-Castelli, C., et al. 2000




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2004
Contact: knakai@ims.u-tokyo.ac.jp