Transcription factor: PerR

Factor type
SWISS-PROT P80239
SubtiList BG11385
Consensus seq.
Comment transcription induced by hydrogen peroxide, by general stress, or by entry into stationary phase under conditions of iron and manganese limitation (class III stress response); expression modulated by Ca2+; mutants lead to higher expression from all peroxide regulon promoters (mrgA, katA, hemAXCDBL, and ahpCF), but has no effect on spore resistance to alkyl hydroperoxides, heat or hydrogen peroxide
Link toPhylogenetic profile , Weight matrix & Motif alignment

Regulated
gene
Operon Sigma Regulation Absolute position Location Binding seq.(cis-element) Exp. Reference Year
ahpC ahpCF ND Negative 4117874..4117935 ND CTTGACAAAAAATATATATTAATTAATAATTCATATATAATTAGAAT
TATTATTG
AAAGCGA
FT Herbig, A. F., et al. 2001
fur ND SigA? Negative 2449540..2449554 -49:-35 TTATAATAATTATAG
FT Fuangthong M, et al. 2002
hemA ND ND Negative 2878259..2878287 ND AGAAACTATGTTATAATTATTATAAATAA
FT Herbig, A. F., et al. 2001
hemA ND ND Negative 2878213..2878254 ND TTCTATGTTAGAATGATTATAAATTAAGATTGGGTGTTGGGG
FT Herbig, A. F., et al. 2001
katA ND ND Negative 960348..960405 ND CTATTTTATAATAATTATAAAATAATATTGACTTTTTACTTAGAGATG
ATATTATGTT
FT Herbig, A. F., et al. 2001
mrgA ND ND Negative 3382503..3382557 ND TCTAAATTATAATTATTATAATTTAGTATTGATTTTTATTTAGTATAT
GATATAA
FT Herbig, A. F., et al. 2001
perR ND SigA? Negative 943762..943787 -13:+13 TTACACTAATTATAAACATTACAATG
FT Fuangthong M, et al. 2002
perR ND SigA? Negative 943771..943793 -4:+18 TTATAAACATTACAATGTAAGAA
FT Fuangthong M, et al. 2002
ykvW ND ND Negative 1450497..1450547 -75:-25 TAATGATAATTATTATCAAAAAGAAATTAAAATAATTATAATTGAA
ATTCT
FT Gaballa, A., et al. 2002




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2004
Contact: knakai@ims.u-tokyo.ac.jp