| Factor type | |
|---|---|
| SWISS-PROT | P10726 |
| SubtiList | BG10751 |
| Consensus seq. | TAAA(-35)-N15-GCCGATAT(-10) |
| Comment | RNA polymerase Sigma-28 factor (Sigma D) autolytic enzymes defect in flagellar synthesis |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|
| cheV | cheV | 1472833..1472881 | -41:+8 | GCTGCCATTCACTTTTTACAAATTACGCCGATATATACAGTAC AATACT |
ND | Fredrick KL, et al. | 1994 |
| degR | degR | 2307593..2307641 | -41:+8 | CAAAATAGAAAAGAAAATAAAAATAAGCCGATATAACTATTGA ACCAGA |
ND | Ogura M, et al. | 1996 |
| dltA | dltABCDE | 3950996..3951043 | ND | ATAAAGATTCATTTTCAAAAACATACGCCGATATATTAATTTGAG GGA |
DB | Perego M, et al. | 1995 |
| epr | epr | 3938819..3938869 | -44:+7 | CCTTCTTACTATTAATCTCTCTTTTTTTCTCCGATATATATATCA AACATC |
PE | Dixit, M., et al. | 2002 |
| flgB | fla/che operon (31 genes) | 1690311..1690362 | -41:+11 | CATTTTTCTTCAAAAAGTTT-CAAAAATGCCGAAAAGAAAGGAG AAAAAACAG |
Estacio W, et al. West, J. T., et al. |
1998 2000 |
|
| fliH | fla/che operon (26 genes) | 1694462..1694504 | ND | CTCCACAAAAGGAAAAAAGAAAACTTTCTATACAAGAGGTGCG |
ND | Albertini AM, et al. | 1991 |
| fliK | fla/che operon (22 genes) | 1697599..1697646 | ND | CTTTCGTCGAGACCGACGACGGGTTCTGCCGCTAAAAACATGAAAA GT |
ND | Albertini AM, et al. | 1991 |
| fliL | fla/che operon (19 genes) | 1700345..1700391 | ND | TTTACACTGAATGCGCTATTTATTGAACAGATTGAATGTTTTCCG GA |
ND | Albertini AM, et al. | 1991 |
| fliL | fla/che operon (19 genes) | 1700450..1700495 | ND | GTTCTGGAAAAGATCGCAGCTTTCTACCGAAAAATACAAATATT TG |
ND | Albertini AM, et al. | 1991 |
| hag | hag | 3635018..3635063 | ND | TTTTGTATTAACAAAATCAGAGACAATCCGATATTAATGATGT AGC |
ND | Mirel DB, et al. | 1989 |
| lytA | lytA-lytB-lytC | 3662133..3662181 | -43:+7 | TTTTTCTTTAAAATATAAAA--TAGGTTGACGATAAAATATAATG AGGTGA |
Lazarevic V, et al. Kuroda A, et al. |
1992 1993 |
|
| lytD | lytD | 3686528..3686577 | -42:+9 | TTCACCTATAAATGAAGCAT--GCGCGTGCCGATAAATAAACTA GTTTTATA |
Rashid MH, et al. Margot P, et al. |
1995 1994 |
|
| lytF | lytF | 1012575..1012628 | ND | TAAAAAGGCAAAACGATGAGACAAATGTGCCGATATAAAAAAGA AACAGCAAAT |
Margot P, et al. | 1999 | |
| mcpA | mcpA | 3207209..3207260 | ND | TTTTGCTGTATATATTTACCCATTTCCAGCCGATATGAAGGGTAGC ATAAAA |
ND | Hanlon DW, et al. | 1994 |
| mcpB | mcpB | 3211493..3211536 | ND | TTTTATTTTAAAACTTTTTT---AAGCAGCCGATATATACTGTATC A |
HM | Hanlon DW, et al. | 1994 |
| mcpC | mcpC | 1462879..1462930 | ND | TTTGATTATTCATTTTTCAAACGAAAGGGCCGATATAGAAATTA GGAGGGGA |
Muller J, et al. | 1997 | |
| motA | motA-motB | 1434583..1434629 | -42:+5 | AATGTCCCTAAAGTTCCGGG-CACCAAAACCGATATTAACCATA GACA |
Mirel DB, et al. | 1992 | |
| nfrA | nfrA-ywcH | 3911264..3911309 | -45:+5 | TTTCACTTTTGAGATCA--CTTTTTTTCGGATATGATAAAAAG TGATA |
PE DB | Moch C, et al. Moch C, et al. |
2000 1998 |
| rpoD | ropD | 2600755..2600807 | ND | CTTCTTTGGCTCAAGAAATCGTTACATTGAACCGATCTTTAAAATA ACTGGAG |
sequence S1 |
Wang LF, et al. Briat JF, et al. |
1985 1985 |
| tlpA | tlpA-mcpA | 3209328..3209376 | ND | TTTCAATGTAATTTAAAGGA--AGATCCGCCGATATAATTTGTAAA TTATT |
HM | Hanlon DW, et al. | 1994 |
| tlpB | tlpB | 3205115..3205161 | ND | TTTTTTATTAAACCTTTTATCCTAGTTTGACGATATTAGATTTATC T |
HM | Hanlon DW, et al. | 1994 |
| tlpC | tlpC | 374072..374119 | ND | CTAAAATAAAACTTTAAACCCAAAAACCCGATAAGTAATATGAC CTGC |
Other | Hanlon DW, et al. | 1994 |
| ybdO | ybdO | 224982..225036 | ND | TTTGAGGTTAATATATACAT-TATATTCGCCGATAAAAAAGAATAA GAGAGAATAC |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yfmT | yfmT-yfmS | 806364..806418 | ND | TGAACCGATAGAAAAAATAG----ATTCGCCCATATTTTGATTTGC GGTTATAAAGGAG |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yhfV | hemAT | 1113273..1113321 | ND | TCTGCAGCTTCATTCATGTT-TCCCTTGGCCGATAAAAAAGAAAAA GGCT |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yjbJ | yjbJ | 1235063..1235115 | ND | GCCCGCTTTCAAGTTTCAGTTCTTTGCTCAGCCAATATACAAACGG TCTGACA |
ND | Serizawa M, et al. | 2004 |
| yjcP | yjcP-yjcQ | 1265868..1265915 | ND | CAAATTGTTAATCGATAACTTTTCATTCCCGATATTAAAAATGGGA GT |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yjfB | yjfB | 1282653..1282702 | ND | TTTCACTGTAAAATCATACAAACCCGCCGATAGGTAAGGCATAGGA GGTG |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| ylqB | ylqB | 1670969..1671018 | ND | AAATACGCTAAATATCATCC-AATTTATTCCGATATTGTATATGAA CCCTA |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yoaH | yoaH | 2030403..2030449 | ND | TATCACTATAAAACTTGATA--ACACGTGTCGATATTATGGACATG AGC |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yscB | yscB | 2952809..2952865 | ND | AAGAAATGTAAAACAAAGTTAATCTCTGACCGATATAAGGAGCAGA AGGGAGCCTGA |
AR, Nothern blot | Serizawa M, et al. | 2004 |
| yvyC | yvyC-fliDST | 3633805..3633849 | ND | ATATGTGTAATCTTATCTCGACTTAGTCGATATAAACGATAG ATT |
ND | Chen L, et al. | 1994 |
| yvyF | yvyF-flgM-yvyG-flgK-flgL; (flgM-K intergenic) | 3640119..3640163 | ND | AGAAGCTAAATGATTCT-GTTTTTATGCCGATATAATCACTA GAAA |
RO | Mirel DB, et al. | 1994 |
| yxkC | yxkC | 3988176..3988225 | ND | ATATTGACTAAGAGAAATAA----TATAGGCATTATAGTACATATG TTTCGTAC |
AR, Nothern blot | Serizawa M, et al. | 2004 |