| Factor type | |
|---|---|
| SWISS-PROT | Q45585 |
| SubtiList | BG11573 |
| Consensus seq. | TGAAACN(16)CGTA |
| Comment | ECF-type sigma factor |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|
| abh | ND | 1517073..1517114 | ND | CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA |
RO | Huang X, et al. | 1998 |
| divIC | ND | 69016..69057 | ND | TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG |
RO | Huang X, et al. | 1998 |
| pbpE | ND | 3534514..3534556 | ND | ATATTTGAAACGTTAGTAGGTTAGTAA-CGTACAGAGATATGGG |
S1 | Huang X et al. | 1999 |
| pbpX | pbpX | 1765049..1765105 | ND | tttttgacAACTTTTttagggctttattCGTCtaacaaa |
reporter fusion | Cao M, et al. | 2004 |
| pspA | ND | 670717..670766 | -40:+10 | AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGG GTTACC |
AR, PE, DB, beta-gal ROMA, AR, beta-gal, PE, RO |
Wiegert, T., et al. Cao, M., et al. |
2001 2002 |
| sigW | ND | 194771..194813 | ND | AAAATTGAAACCTTTTGAAACGAAGCT-CGTATACATACAGACC |
S1 | Huang X et al. | 1999 |
| sppA | ND | 3020111..3020151 | ND | TGAAGTGAAACATTTTTCATATTGAAT-CGTATAATGAGAGA |
S1 | Huang X et al. | 1999 |
| xpaC | ND | 35763..35805 | ND | GAAGATGAAACTTGTTTAAGGATTGAA-CGTAGTAGATAATAAT |
RO | Huang X et al. | 1999 |
| ybfO | ND | 249899..249937 | ND | gaaaagGAAACtttttctatatctatctCGTAatgacta |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yceC | ND | 311592..311634 | ND | ttttacGAAACtttgatataataacaaaCGTAtatattagtaa |
ROMA, AR, beta-gal, RO | Cao, M., et al. | 2002 |
| ydbS | ND | 512310..512352 | ND | AAGAATGAAACCTTTCTGTAAAAGAGA-CGTATAAATAACGACG |
S1 | Huang X et al. | 1999 |
| yeaA | ND | 682933..682975 | ND | CTTTATGAAACCTTTGGCCCTATTTAT-CGTATTACGTAAAAAC |
S1 | Huang X et al. | 1999 |
| yfhL | ND | 928688..928731 | ND | ATGCATGAAACATTTCTTCTTTCTGCA-CGTAACAATGAGAAAGG |
S1 | Huang X et al. | 1999 |
| yjbC | ND | 1226135..1226173 | ND | aaaaaTGAAACcatggcggaagttcgcaCGTCtttatag |
ROMA, AR, beta-gal, PE, RO | Cao, M., et al. | 2002 |
| yjoB | ND | 1313695..1313737 | ND | TGGGATGAAACAAAATGCTATGTCAAT-CGTATATATAACGTTC |
S1 | Huang X et al. | 1999 |
| yknW | ND | 1502825..1502867 | ND | AAACATGAAACTTTTTGATATCCTTCC-CGTACTATTTGTTAGA |
S1 | Huang X et al. | 1999 |
| yndN | ND | 1915804..1915848 | -41:+4 | CTGTATGAAACTTTCTTATGAAAAAAGTCGTATATGTGGATGAT C |
PE | Cao, M., et al. | 2001 |
| yoaF | ND | 2026656..2026694 | ND | aataaTGAAACccggagtatgccaagccCGTAtaacata |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yoaG | ND | 2027880..2027918 | ND | attttTGAAACcttttattagcgcattgCGTAtagcacg |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yobJ | ND | 2070322..2070364 | ND | TTATATGAAACCTTTTTTATTTTAGCC-CGTATTAAAAGTAAAT |
S1 | Huang X et al. | 1999 |
| yozO | ND | 2099171..2099209 | ND | aatatTGAAACttttttctctatatgtgCGTAttacttg |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yqeZ | ND | 2619051..2619089 | ND | aaaaaTGAAACctttgatacatttgttaCGTAtgaagag |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yrhH | ND | 2777734..2777772 | ND | tctatTGAAACatttttcaatacattgcCGTCtagttgg |
PE/ ROMA, AR, beta-gal, PE |
Huang X, et al. Cao, M., et al. |
1998 2002 |
| ysdB | ND | 2950493..2950535 | ND | AAAAGTGAAACCTTTTTCTATGCTTTT-CGTATTACATCAGATC |
S1 | Huang X et al. | 1999 |
| ythP | ND | 3071176..3071213 | ND | gttaaaGAAACtttttttattc-tatttCGTAgtaaatt |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| yuaF | ND | 3181621..3181663 | ND | AATTTTGAAACTTTTCCCGAGGTGTCT-CGTATAAATGGTAACG |
S1 | Huang X et al. | 1999 |
| yvlA | ND | 3607855..3607897 | ND | GAATTTGAAACCTGAAGAGATTTTAAA-CGTATAAATAAGTAAA |
S1 | Huang X et al. | 1999 |
| ywaC | ND | 3949645..3949683 | ND | attcatagAACcttgcagcagacagggaCGTCtagtaca |
ROMA, AR, beta-gal, PE, RO | Cao, M., et al. | 2002 |
| ywbN | ND | 3927061..3927099 | ND | aaatacaAAACaaatgatcagtcctataCGTCttatgat |
PE/ ROMA, AR, beta-gal, PE |
Huang X, et al. Cao, M., et al. |
1998 2002 |
| ywnJ | ywnJ | 3758641..3758693 | -44:+9 | TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTA CATGTAGG |
runoff transcription | Cao M, et al. | 2004 |
| ywoA | ND | 3757506..3757544 | ND | ttattTGAAACttttcatgagtaagattaGTCtactaaa |
ROMA, AR, beta-gal | Cao, M., et al. | 2002 |
| ywrE | ND | 3717765..3717807 | ND | TTTTATGAAACGTTTTTCCTTTTTCTT-CGTATAAAGGTAGATT |
S1 | Huang X et al. | 1999 |
| yxjI | ND | 3996173..3996215 | ND | GAGCCTGAAACCTTTTCGCCACCTATC-CGTAATTTCATACAAG |
S1 | Huang X et al. | 1999 |
| yxzE | ND | 3981927..3981969 | ND | TGAAATGAAACCGGTCAGCGTTTCATC-CGTATAACAGATATGG |
S1 | Huang X, et al. | 1999 |