Transcription factor: SigX

Factor type
SWISS-PROT P35165
SubtiList BG10536
Consensus seq. TGTAACN(17)CGAC
Comment ECF-type sigma factor
Link toPhylogenetic profile , Weight matrix & Motif alignment

Regulated
gene
Operon Absolute position Location Binding seq.(cis-element) Exp. Reference Year
abh ND 1517073..1517114 ND CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA
Other Huang X, et al. 1998
csbB ND 930038..930079 ND ATTGTAACAAAAAACAG-GTTTAAACGACTTTAAAAAAAGGAA
Other Huang X, et al. 1998
divIC ND 69016..69057 ND TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG
Other Huang X, et al. 1998
dltA dltABCDE 3951054..3951103 ND AAAATGAAACTTTTTGAGCATCTGATCGTCAAATAATCATGT
GATTGTCG
ROMA,beta-gal,PE Cao M, et al. 2004
lytR ND 3662191..3662232 ND AATGAAACTTTTTTTTA-TAAAAAACGACTATTTTAGGATTTC
Other Huang X, et al. 1998
pbpX pbpX 1765049..1765105 ND tttttgacAACTTTTttagggctttattCGTCtaacaaa
ROMA,beta-gal Cao M, et al. 2004
pssA pssA-ybfM-psd 247660..247706 ND TTCCTGTAACGCTATTCGATCACTATCGTCAAATAATATAGATG
GTT
ROMA,beta-gal Cao M, et al. 2004
rapD ND 3743292..3743333 ND AATGTAACCAACTGTCAATGAGAGCCGTCAAAAGTTATGATA
Other Huang X, et al. 1998
sigX sigX-rsiX 2414418..2414459 ND AATGTAACTTTTCAAGCTATTCATACGACAAAAAAGTGAACG
RO,PE,beta-gal
Other
Huang X, et al.
Huang X, et al.
1997
1998
yrhH ND 2777728..2777769 ND ATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT
RO Huang X, et al. 1998
ywbN ND 3927055..3927096 ND TACAAAACAAATGATCAGTCCTATACGTCTTATGATAAATTA
RO, PE Huang X, et al. 1998
ywnJ ywnJ 3758641..3758693 -44:+9 TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTA
CATGTAGG
ROMA,beta-gal,PE Cao M, et al. 2004
ywoA ND 3757506..3757543 -38:-1 TTATTTGAAACTTTTCATGAGTAAGATTAGTCTACTAA
HB, PE Cao, M., et al.
Ohki, R., et al.
2002
2003




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2004
Contact: knakai@ims.u-tokyo.ac.jp