| phylum |
order |
species |
name |
| Actinobacteria |
Actinobacteridae |
Bifidobacterium longum NCC2705 |
blo |
| Corynebacterium glutamicum ATCC 13032 |
cgl |
| Corynebacterium efficiens YS-314 |
cef |
| Mycobacterium leprae TN |
mle |
| Mycobacterium tuberculosis CDC1551, clinical strain |
mtc |
| Mycobacterium tuberculosis H37Rv, laboratory strain |
mtu |
| Streptomyces coelicolor A3(2) |
sco |
| Streptomyces avermitilis |
sma |
| Tropheryma |
Tropheryma whipplei Twist |
twh |
| Tropheryma whipplei TW08/27 |
tws |
| Aquificae |
Aquificales |
Aquifex aeolicus VF5 |
aae |
| Bacteroidetes |
Bacteroides (class) |
Bacteroides thetaiotaomicron VPI-5482 |
bth |
| Chlamydiae |
Chlamydiales |
Chlamydia muridarum (Chlamydia trachomatis MoPn) |
cmu |
| Chlamydia trachomatis serovar D |
ctr |
| Chlamydophila caviae GPIC |
cca |
| Chlamydophila pneumoniae AR39 |
cpa |
| Chlamydophila pneumoniae CWL029 |
cpn |
| Chlamydophila pneumoniae J138 |
cpj |
| Chlorobi |
Chlorobia |
Chlorobium tepidum TLS |
cte |
| Cyanobacteria |
Chroococcales |
Synechocystis sp. PCC 6803 |
syn |
| Thermosynechococcus elongatus BP-1 |
tel |
| Nostocales |
Anabaena sp. PCC 7120 (Nostoc sp. PCC 7120) |
ana |
| Deinococcus-Thermus |
Deinococci |
Deinococcus radiodurans R1 |
dra |
| Firmicutes |
Bacillales |
Bacillus anthracis Ames |
ban |
| Bacillus cereus ATCC 14579 |
bce |
| Bacillus halodurans C-125 |
bha |
| Bacillus subtilis 168 |
bsu |
| Listeria innocua CLIP 11262 |
lin |
| Listeria monocytogenes EGD-e |
lmo |
| Oceanobacillus iheyensis HTE831 |
oih |
| Staphylococcus aureus MW2 |
sam |
| Staphylococcus aureus Mu50, MRSA strain with vancomycin resistance |
sav |
| Staphylococcus aureus N315, meticillin-resistant (MRSA) |
sau |
| Staphylococcus epidermidis ATCC 12228 |
sep |
| Clostridia |
Clostridium acetobutylicum ATCC 824 |
cac |
| Clostridium perfringens 13 |
cpe |
| Clostridium tetani E88 |
ctc |
| Thermoanaerobacter tengcongensis MB4T |
tte |
| Lactobacillales |
Enterococcus faecalis V583 (vancomycin-resistant clinical isolate) |
efa |
| Lactobacillus plantarum WCFS1 |
lpl |
| Lactococcus lactis subsp. lactis IL1403 |
lla |
| Streptococcus agalactiae 2603 (serotype
V) |
sag |
| Streptococcus agalactiae NEM316 |
san |
| Streptococcus mutans UA159 (serotypeC) |
smu |
| Streptococcus pneumoniae R6 |
spr |
| Streptococcus pneumoniae TIGR4 |
spn |
| Streptococcus pyogenes SF370 (serotyp M1) |
spy |
| Streptococcus pyogenes MGAS315 (serotype M3) |
spg |
| Streptococcus pyogenes MGAS8232 (serotype M18) |
spm |
| Streptococcus pyogenes SSI-1 |
sps |
| Mollicutes |
Mycoplasma genitalium G-37 |
mge |
| Mycoplasma penetrans HF-2 |
mpe |
| Mycoplasma pneumoniae M129 |
mpn |
| Mycoplasma pulmonis UAB CTIP |
mpu |
| Ureaplasma urealyticum serovar 3 |
uur |
| Fusobacteria |
Fusobacterales |
Fusobacterium nucleatum ATCC 25586 |
fnu |
| Proteobacteria |
Alphaproteobacteria |
Agrobacterium tumefaciens C58 (Cereon) |
atc |
| Agrobacterium tumefaciens C58 (U.Washington/Dupont) |
atu |
| Bradyrhizobium japonicum USDA110 |
bja |
| Brucella melitensis 16M |
bme |
| Brucella suis 1330 |
bms |
| Caulobacter crescentus CB15 |
ccr |
| Mesorhizobium loti MAFF303099 |
mlo |
| Rickettsia conorii Malish 7 |
rco |
| Rickettsia prowazekii Madrid E |
rpr |
| Sinorhizobium meliloti 1021 |
sme |
| Betaproteobacteria |
Neisseria meningitidis MC58 (serogroup B) |
nme |
| Neisseria meningitidis Z2491 (serogroup A) |
nma |
| Nitrosomonas europaea ATCC 19718 |
neu |
| Ralstonia solanacearum GMI1000 |
rso |
| Epsilonproteobacteria |
Campylobacter jejuni NCTC11168 |
cje |
| Helicobacter pylori 26695 |
hpy |
| Helicobacter pylori J99 |
hpj |
| Gammaproteobacteria |
Escherichia coli K-12 W3110 |
ecj |
| Buchnera aphidicola Bp (symbiont of Baizongia pistaciae) |
bab |
| Buchnera aphidicola Sg (symbiont of Schizaphis graminum) |
bas |
| Buchnera sp. APS (symbiont of Acyrthosiphon pisum) |
buc |
| Coxiella burnetii RSA 493 |
cbu |
| Escherichia coli CFT073 |
ecc |
| Escherichia coli K-12 MG1655 |
eco |
| Escherichia coli O157:H7 Sakai |
ecs |
| Escherichia coli O157:H7 EDL933 |
ece |
| Haemophilus influenzae Rd KW20 |
hin |
| Pasteurella multocida PM70 |
pmu |
| Pseudomonas aeruginosa PA01 |
pae |
| Pseudomonas putida KT2440 |
ppu |
| Pseudomonas syringae pv. tomato DC3000 |
pst |
| Salmonella typhi CT18 |
sty |
| Salmonella typhi Ty2 |
stt |
| Salmonella typhimurium LT2 |
stm |
| Shewanella oneidensis MR-1 |
son |
| Shigella flexneri 301 (serotype 2a) |
sfl |
| Shigella flexneri 2457T (serotype 2a) |
sfx |
| Vibrio cholerae El Tor N16961 |
vch |
| Vibrio parahaemolyticus RIMD 2210633 |
vpa |
| Vibrio vulnificus CMCP6 |
vvu |
| Wigglesworthia brevipalpis |
wbr |
| Xanthomonas campestris pv. campestris ATCC 33913 |
xcc |
| Xanthomonas axonopodis pv. citri 306 |
xac |
| Xylella fastidiosa 9a5c |
xfa |
| Xylella fastidiosa Temecula1 |
xft |
| Yersinia pestis CO92 |
ype |
| Yersinia pestis KIM |
ypk |
| Spirochaetes |
Spirochaetales |
Borrelia burgdorferi B31 |
bbu |
| Leptospira interrogans 56601 (serovarlai) |
lil |
| Treponema pallidum Nichols |
tpa |
| Thermotogae |
Thermotogales |
Thermotoga maritima MSB8 |
tma |
