match_sequences

AbrB

We searched for AbrB binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for AbrB.

Transcription Factor	Regulated gene	organism	position	cis-element	score
AbrB	ftsA	Bsu	-81..-93	`GTGTAACAAAAA`	`7.136430`
AbrB	ftsA	Spy	-125..-113	`ATATAACAAAAA`	`6.427440`
AbrB	aprE	Bsu	-74..-62	`CTATTACAATAA`	`6.315900`
AbrB	aprE	Bha	-151..-163	`ATGTGAGAAAAA`	`6.664880`
AbrB	aprE	Spn	-207..-195	`GTGTGCTAAAAA`	`6.429990`
AbrB	aprE	Nos	-251..-239	`ATTTTAGAAAAA`	`6.890850`
AbrB	aprE	Dra	-79..-91	`ATTTGACAAAAA`	`8.505090`
AbrB	yxbB	Bsu	-58..-46	`GTTTTCTAAAAA`	`6.655960`
AbrB	yxbB	Bha	-235..-223	`ATTGCACAAAAA`	`6.159500`
AbrB	yxbB	Cac	-85..-97	`ATGTTACAAAAT`	`6.106600`
AbrB	yxbB	Lla	-10..-22	`CTTTCTCAATAA`	`5.777400`
AbrB	yxbB	Spy	-45..-57	`CTTTTCTAAAAA`	`6.655960`
AbrB	yxbB	Spn	-63..-51	`ATTTTAGAAAAA`	`6.890850`
AbrB	yxbB	Sau	-181..-193	`CTTTTTCAAAAA`	`7.555830`
AbrB	yxbB	Mle	-9..-21	`GTATGGCAAAAA`	`6.066960`
AbrB	yxbB	Eco	-57..-45	`CTGTGACAAAAT`	`5.973180`
AbrB	yxbB	EcZ	-57..-45	`CTGTGACAAAAT`	`5.973180`
AbrB	yxbB	Ecs	-57..-45	`CTGTGACAAAAT`	`5.973180`
AbrB	yxbB	Ype	-131..-119	`CTGTGCCAAAAT`	`6.327000`
AbrB	yxbB	Pae	-40..-52	`CTGTATCAAAAA`	`6.480270`
AbrB	yxbB	Hin	-63..-75	`ATGGCACAAAAA`	`5.853690`
AbrB	yxbB	jHp	-60..-48	`ATTTACCAAAAA`	`8.009320`
AbrB	yxbB	Cje	-186..-198	`TTTTTACAAAAA`	`6.364300`
AbrB	yxbB	Atu	-204..-216	`ATGTGACATCAA`	`6.063530`
AbrB	yxbB	Rpr	-15..-3	`ATTTAAGAAAAA`	`6.121100`
AbrB	yxbB	Rco	-153..-165	`AGGTGCGATAAA`	`5.804000`
AbrB	yxbB	Syn	-46..-58	`AGTGGACAAAAA`	`6.881150`
AbrB	yxbB	Nos	-32..-44	`ATTTGCCAGAAA`	`6.542630`
AbrB	yxbB	Aae	-25..-13	`AGTTTGCATAAA`	`6.213740`
AbrB	yxbB	Tma	-20..-8	`ATTTTACAGAAA`	`6.108970`
AbrB	yxbB	Fnu	-91..-103	`ATTTTATAAAAA`	`6.515400`
AbrB	comK	Bsu	-83..-71	`ATGTTAAAAAAA`	`5.850310`
AbrB	sigW	Bsu	-41..-53	`ATTGGGCAAAAA`	`6.352930`
AbrB	sigW	Bha	-118..-130	`CTTTAGCAAAAA`	`6.445430`
AbrB	sigW	Eco	-107..-95	`ACTTTACAAAAA`	`6.108970`
AbrB	sigW	EcZ	-107..-95	`ACTTTACAAAAA`	`6.108970`
AbrB	sigW	Ecs	-107..-95	`ACTTTACAAAAA`	`6.108970`
AbrB	sigW	Ype	-87..-99	`AGTTTATAAAAA`	`6.046810`
AbrB	sigW	Pae	-56..-44	`ATTTGCGAATAA`	`6.656480`
AbrB	sigW	Pmu	-67..-79	`CATTGACAAAAA`	`6.541710`
AbrB	sigW	Rso	-86..-74	`ATTTTACAAGAA`	`6.187050`
AbrB	sigW	Mlo	-63..-51	`GTTTACCAAAAA`	`7.796060`
AbrB	sigW	Syn	-168..-180	`ATATTGCAAAAA`	`6.200380`
AbrB	sigW	Nos	-226..-238	`GGTTGACAAAAT`	`5.810400`
AbrB	hpr	Bsu	-185..-197	`ATGTTCCAAACA`	`5.838110`
AbrB	hpr	Bha	-148..-136	`ATTTTTTAAAAA`	`5.859240`
AbrB	hpr	Cac	-287..-299	`AATTAACAAAAA`	`5.905380`
AbrB	hpr	Lla	-15..-27	`ATTATACAATAA`	`5.867140`
AbrB	hpr	Spn	-43..-55	`ATTTGACAGAAA`	`6.188810`
AbrB	hpr	Sau	-19..-31	`ATTTCTCAATAA`	`5.990660`
AbrB	hpr	Lin	-228..-216	`ATTTCTCAAAAA`	`6.658690`
AbrB	hpr	Cgl	-148..-136	`ATTTTCCAATAA`	`8.111040`
AbrB	hpr	Eco	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	EcZ	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	Ecs	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	Ype	-178..-190	`GTTTTATAAAAA`	`6.302140`
AbrB	hpr	Sty	-99..-111	`AGTTACCAACAA`	`6.151090`
AbrB	hpr	Hin	-91..-79	`AGGGTTCAAAAA`	`5.839340`
AbrB	hpr	Pmu	-35..-47	`ATTCTACAAAAA`	`5.969010`
AbrB	hpr	Nme	-273..-261	`CTTTTCCAAACA`	`5.930660`
AbrB	hpr	NmA	-273..-261	`CTTTTCCAAACA`	`5.930660`
AbrB	hpr	Atu	-153..-165	`ATTTGTCAATAA`	`7.180900`
AbrB	hpr	Bme	-48..-60	`ATTTTACAAAAT`	`6.412410`
AbrB	hpr	Ccr	-53..-65	`CGTTCCCAATAA`	`6.318790`
AbrB	hpr	Syn	-45..-33	`ATTGGCCAAAAA`	`7.703560`
AbrB	hpr	Fnu	-105..-117	`AATTTACAATAA`	`6.007100`
AbrB	hpr	Bsu	-185..-197	`ATGTTCCAAACA`	`5.838110`
AbrB	hpr	Bha	-148..-136	`ATTTTTTAAAAA`	`5.859240`
AbrB	hpr	Cac	-287..-299	`AATTAACAAAAA`	`5.905380`
AbrB	hpr	Lla	-15..-27	`ATTATACAATAA`	`5.867140`
AbrB	hpr	Spn	-43..-55	`ATTTGACAGAAA`	`6.188810`
AbrB	hpr	Sau	-19..-31	`ATTTCTCAATAA`	`5.990660`
AbrB	hpr	Lin	-228..-216	`ATTTCTCAAAAA`	`6.658690`
AbrB	hpr	Cgl	-148..-136	`ATTTTCCAATAA`	`8.111040`
AbrB	hpr	Eco	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	EcZ	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	Ecs	-65..-77	`GTTTTAGAAAAA`	`6.677590`
AbrB	hpr	Ype	-178..-190	`GTTTTATAAAAA`	`6.302140`
AbrB	hpr	Sty	-99..-111	`AGTTACCAACAA`	`6.151090`
AbrB	hpr	Hin	-91..-79	`AGGGTTCAAAAA`	`5.839340`
AbrB	hpr	Pmu	-35..-47	`ATTCTACAAAAA`	`5.969010`
AbrB	hpr	Nme	-273..-261	`CTTTTCCAAACA`	`5.930660`
AbrB	hpr	NmA	-273..-261	`CTTTTCCAAACA`	`5.930660`
AbrB	hpr	Atu	-153..-165	`ATTTGTCAATAA`	`7.180900`
AbrB	hpr	Bme	-48..-60	`ATTTTACAAAAT`	`6.412410`
AbrB	hpr	Ccr	-53..-65	`CGTTCCCAATAA`	`6.318790`
AbrB	hpr	Syn	-45..-33	`ATTGGCCAAAAA`	`7.703560`
AbrB	hpr	Fnu	-105..-117	`AATTTACAATAA`	`6.007100`
AbrB	spoVG	Bsu	-66..-54	`ATTTCAGAAAAA`	`5.780450`
AbrB	spoVG	Cac	-63..-75	`ATTTTATAATAA`	`5.847370`
AbrB	spoVG	Bbu	-63..-51	`TGTTTACAAAAA`	`5.895710`
AbrB	spoVG	Fnu	-74..-62	`ATATTACATTAA`	`5.783050`
AbrB	ycnK	Bsu	-161..-173	`ATTCGACAAAAA`	`6.048850`
AbrB	ycnK	Cac	-106..-118	`AGTTACCAACAA`	`6.151090`
AbrB	ycnK	Lla	-16..-28	`CGTTTACAAAAA`	`7.743400`
AbrB	ycnK	Spy	-58..-70	`ATATTTCAATAA`	`5.873000`
AbrB	ycnK	Spn	-93..-81	`CTATCACAAAAA`	`5.873530`
AbrB	ycnK	Sau	-52..-40	`AAGTGACAAAAA`	`6.449160`
AbrB	ycnK	Lin	-48..-60	`ATTACCCAAAAA`	`5.778590`
AbrB	ycnK	Eco	-45..-57	`AGTTCACATAAA`	`6.100150`
AbrB	ycnK	Ype	-261..-273	`GTGTTTCATTAA`	`5.835880`
AbrB	ycnK	Hin	-46..-58	`AATTAACAAAAA`	`5.905380`
AbrB	ycnK	Mlo	-50..-62	`CTCTACCAAAAA`	`6.491120`
AbrB	ycnK	Nos	-32..-20	`GTTTGATAAAAA`	`6.381980`
AbrB	ycnK	Tma	-73..-61	`AGTTATCATAAA`	`5.784640`
AbrB	ycnK	Fnu	-67..-79	`ATTTTGGAAAAA`	`5.894040`
AbrB	kinB	Bsu	-41..-29	`ATGGTACAATAA`	`6.296060`
AbrB	kinB	Bha	-155..-167	`AGCTTACAATAA`	`5.983690`
AbrB	kinB	Cac	-24..-12	`ATTTTATAAAAA`	`6.515400`
AbrB	kinB	Lla	-48..-36	`AATTAACAAAAA`	`5.905380`
AbrB	kinB	Spy	-146..-158	`ATTTGACAATAA`	`7.837060`
AbrB	kinB	Spn	-9..-21	`CTTTGATAAAAA`	`6.381980`
AbrB	kinB	Sau	-188..-200	`ATTTTATAAAAA`	`6.515400`
AbrB	kinB	Cgl	-249..-237	`AGTTGCGAATAA`	`6.187890`
AbrB	kinB	Mtu	-115..-103	`GTTTGCCAAACA`	`6.010500`
AbrB	kinB	MtC	-115..-103	`GTTTGCCAAACA`	`6.010500`
AbrB	kinB	Eco	-106..-118	`AGGGGCCATAAA`	`6.183050`
AbrB	kinB	EcZ	-107..-119	`AGGGGCCATAAA`	`6.183050`
AbrB	kinB	Ecs	-72..-60	`ATCTGTCATAAA`	`5.797880`
AbrB	kinB	Ype	-208..-220	`CTTTGTCAATAA`	`6.967640`
AbrB	kinB	Sty	-52..-64	`CGTTGACAATAA`	`7.155210`
AbrB	kinB	Pmu	-47..-35	`GTGGTACAATAA`	`6.082800`
AbrB	kinB	Nme	-41..-29	`GATTTACAATAA`	`5.793840`
AbrB	kinB	NmA	-196..-184	`GATTTACAATAA`	`5.793840`
AbrB	kinB	Mlo	-88..-100	`CTTTTCCGAAAA`	`5.930660`
AbrB	kinB	Syn	-169..-181	`ATTTGACCAAAA`	`5.869940`
AbrB	kinB	Nos	-120..-108	`CTTTAAGAAAAA`	`5.907840`
AbrB	kinB	Aae	-72..-60	`AGGTGTCAAAAA`	`7.074530`
AbrB	kinB	Fnu	-78..-66	`CTTTTAGATAAA`	`5.931480`
AbrB	abrB	Bsu	-174..-186	`TTTTTACAAAAA`	`6.364300`
AbrB	abrB	Cac	-57..-69	`ATATTACATTAA`	`5.783050`
AbrB	abrB	Nos	-268..-256	`CGTGACCAAAAA`	`6.172120`
AbrB	yocH	Bsu	-186..-198	`AGGTGACAAAAA`	`7.730690`
AbrB	yocH	Bha	-112..-124	`ATTTTACGAAAA`	`5.790100`
AbrB	yocH	Cac	-247..-235	`AGCTTCCATAAA`	`6.259430`
AbrB	yocH	Lla	-209..-221	`ATTTGCAAAAAA`	`6.589780`
AbrB	yocH	Lin	-61..-73	`ATATGTCAATAA`	`5.952840`
AbrB	yocH	Bsu	-186..-198	`AGGTGACAAAAA`	`7.730690`
AbrB	yocH	Bha	-112..-124	`ATTTTACGAAAA`	`5.790100`
AbrB	yocH	Cac	-247..-235	`AGCTTCCATAAA`	`6.259430`
AbrB	yocH	Lla	-209..-221	`ATTTGCAAAAAA`	`6.589780`
AbrB	yocH	Lin	-61..-73	`ATATGTCAATAA`	`5.952840`
AbrB	yxbC	Bsu	-58..-46	`CTTTTAGAAAAA`	`6.677590`
AbrB	yxbC	Sty	-62..-74	`TTTTGCCAATAA`	`6.129930`
AbrB	rbsR	Bsu	-66..-54	`ATTTGTGAAAAA`	`6.314530`
AbrB	rbsR	Bha	-237..-225	`GTGTTACATAAA`	`7.160070`
AbrB	rbsR	Cac	-219..-207	`ATTTGTCAATAA`	`7.180900`
AbrB	rbsR	Lla	-50..-38	`GGTTTTCATAAA`	`6.341130`
AbrB	rbsR	Spy	-96..-108	`AGTTTTCAAAAA`	`7.300500`
AbrB	rbsR	Spn	-38..-50	`GTTTTCGATAAA`	`6.285300`
AbrB	rbsR	Lin	-176..-188	`CGTTACCAAAAA`	`7.327470`
AbrB	rbsR	EcZ	-166..-154	`CGGTTTCATAAA`	`6.035320`
AbrB	rbsR	Ecs	-166..-154	`CGGTTTCATAAA`	`6.035320`
AbrB	rbsR	Ype	-155..-167	`TTGTTACAAAAA`	`6.058490`
AbrB	rbsR	Hin	-70..-58	`ATTTGCAATAAA`	`5.843670`
AbrB	rbsR	Tma	-49..-37	`ATTTTATAATAA`	`5.847370`
AbrB	yvqH	Cac	-39..-27	`ATTTAACAACAA`	`6.265860`
AbrB	yvqH	Aae	-38..-50	`CTCTGCGAAAAA`	`5.806310`
AbrB	dppA	NmA	-4..-16	`GTTCTCCAAAAA`	`6.109570`
AbrB	argC	Cac	-34..-46	`ATTATACATAAA`	`5.789060`
AbrB	argC	Eco	-142..-154	`GTGTGTCAACAA`	`5.940220`
AbrB	argC	EcZ	-142..-154	`GTGTGTCAACAA`	`5.940220`
AbrB	argC	Ecs	-142..-154	`GTGTGTCAACAA`	`5.940220`
AbrB	argC	Nos	-171..-183	`ATAGGACAAAAA`	`6.121680`
AbrB	pbpE	Bsu	-110..-98	`ATTTTGCAAAAA`	`7.428440`
AbrB	pbpE	Lla	-70..-58	`ATTTTAAAAAAA`	`6.156120`
AbrB	pbpE	Lin	-150..-162	`GTTTTAAAAAAA`	`5.942860`
AbrB	pbpE	EcZ	-4..-16	`GGTGTCCATAAA`	`6.195760`
AbrB	pbpE	Ecs	-4..-16	`GGTGTCCATAAA`	`6.195760`
AbrB	pbpE	Hin	-44..-56	`ATTTTAGAAAAA`	`6.890850`
AbrB	pbpE	Xfa	-59..-71	`CTGTTCCACAAA`	`5.943720`
AbrB	pbpE	Mlo	-28..-16	`CGTTTCCAACAA`	`6.707580`
AbrB	pbpE	Syn	-151..-163	`ATTTGCCAAAAC`	`6.279910`
AbrB	citB	Xfa	-196..-208	`GTATGTCAAAAA`	`6.407610`
AbrB	citB	Fnu	-41..-53	`ATTTTCTAAAAA`	`6.869220`