match_sequences

CcpA

We searched for CcpA binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for CcpA.

Transcription Factor	Regulated gene	organism	position	cis-element	score
CcpA	licB	Bsu	-76..-63	`TGAAAGCGATTTC`	`11.327930`
CcpA	licB	Bha	-35..-22	`TGAAAGCGCTTAT`	`9.546630`
CcpA	licB	Lla	-98..-111	`TGAAAGTGCTTTA`	`7.850390`
CcpA	licB	Spn	-89..-76	`TGGAAACGCTTTA`	`9.284740`
CcpA	licB	Lin	-55..-42	`TGTAAGCCCTATC`	`8.722890`
CcpA	xylA	Bha	-32..-19	`TGATAACGCTTAC`	`8.670510`
CcpA	xylA	Mtu	-109..-96	`GGTAAACGCTAAC`	`7.065350`
CcpA	xylA	MtC	-34..-21	`GGTAAACGCTAAC`	`7.065350`
CcpA	xylA	Nos	-142..-155	`TGAAAACTTTTTA`	`7.107600`
CcpA	dra	Spn	-45..-32	`TGTAAACGATTTA`	`8.200940`
CcpA	araA	Bsu	-37..-24	`TGAAAGCGTTTTA`	`11.172370`
CcpA	ackA	Bsu	-215..-202	`TGTAAGCGTTCAT`	`7.095830`
CcpA	ackA	Bha	-154..-167	`TGAAACCGCTTTT`	`6.977410`
CcpA	ackA	Lla	-15..-28	`TGTATGCGTTTTA`	`8.970780`
CcpA	ackA	Spy	-27..-14	`AGAAAACGATTTC`	`7.248180`
CcpA	ackA	Spn	-29..-16	`TGAAAACGCTTAA`	`9.321450`
CcpA	ackA	Vch	-43..-30	`CGAAAACGCTTCC`	`7.497850`
CcpA	ackA	Bme	-170..-157	`TGAAAGCGCATAG`	`7.388650`
CcpA	ackA	Nos	-114..-101	`TGGAAACGGTTCA`	`8.050760`
CcpA	acoR	Bsu	-66..-53	`TGAAAGCGCTTTA`	`11.454360`
CcpA	acoR	Bha	-116..-103	`TGTTAGCGCTTTC`	`10.571550`
CcpA	citM	Bsu	-31..-18	`TGTAAGCGGATTC`	`11.018820`
CcpA	citM	Bha	-132..-119	`AGTAAGCTTTTTC`	`7.067920`
CcpA	citM	Spy	-268..-281	`TGAAAGCGCTCTT`	`8.365780`
CcpA	citZ	Bsu	-113..-100	`TGTAAGCATTTTC`	`9.280500`
CcpA	citZ	Xfa	-151..-138	`TATAAGCGCTTAA`	`6.819170`
CcpA	citZ	Nme	-72..-85	`TGAAAGCGGTAAA`	`10.019750`
CcpA	citZ	NmA	-72..-85	`TGAAAGCGGTAAA`	`10.019750`
CcpA	pta	Bsu	-99..-86	`TGAAAGCGCTATA`	`10.995200`
CcpA	pta	Bha	-193..-180	`TGGAAACGCTTTA`	`9.284740`
CcpA	pta	Spn	-105..-92	`TGAAAGCGGATTT`	`8.580750`
CcpA	pta	Syn	-142..-129	`TAAAAGCGCTATC`	`8.866270`
CcpA	bglP	Bsu	-252..-239	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Bha	-222..-209	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Cac	-201..-188	`TGAAAAGGTTTTC`	`7.709880`
CcpA	bglP	Lla	-70..-83	`AGCAAGCGGTAAC`	`7.385570`
CcpA	bglP	Spy	-209..-196	`TGAAAACGCTTGA`	`8.035830`
CcpA	bglP	Spn	-168..-155	`TAAAAACGGTTAC`	`6.973160`
CcpA	bglP	Lin	-170..-157	`TGCAACCGTTTTC`	`7.915810`
CcpA	bglP	Eco	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	EcZ	-121..-108	`TGAAAGCGATCAC`	`8.634900`
CcpA	bglP	Ecs	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	Vch	-125..-112	`TGCAAACGTTCCC`	`6.912740`
CcpA	bglP	Pmu	-58..-45	`AGAAAACGTTTAC`	`7.854830`
CcpA	bglP	Bsu	-252..-239	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Bha	-222..-209	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Cac	-201..-188	`TGAAAAGGTTTTC`	`7.709880`
CcpA	bglP	Lla	-70..-83	`AGCAAGCGGTAAC`	`7.385570`
CcpA	bglP	Spy	-209..-196	`TGAAAACGCTTGA`	`8.035830`
CcpA	bglP	Spn	-168..-155	`TAAAAACGGTTAC`	`6.973160`
CcpA	bglP	Lin	-170..-157	`TGCAACCGTTTTC`	`7.915810`
CcpA	bglP	Eco	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	EcZ	-121..-108	`TGAAAGCGATCAC`	`8.634900`
CcpA	bglP	Ecs	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	Vch	-125..-112	`TGCAAACGTTCCC`	`6.912740`
CcpA	bglP	Pmu	-58..-45	`AGAAAACGTTTAC`	`7.854830`
CcpA	bglP	Bsu	-252..-239	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Bha	-222..-209	`TGAAAGCGTTGAC`	`11.024730`
CcpA	bglP	Cac	-201..-188	`TGAAAAGGTTTTC`	`7.709880`
CcpA	bglP	Lla	-70..-83	`AGCAAGCGGTAAC`	`7.385570`
CcpA	bglP	Spy	-209..-196	`TGAAAACGCTTGA`	`8.035830`
CcpA	bglP	Spn	-168..-155	`TAAAAACGGTTAC`	`6.973160`
CcpA	bglP	Lin	-170..-157	`TGCAACCGTTTTC`	`7.915810`
CcpA	bglP	Eco	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	EcZ	-121..-108	`TGAAAGCGATCAC`	`8.634900`
CcpA	bglP	Ecs	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	bglP	Vch	-125..-112	`TGCAAACGTTCCC`	`6.912740`
CcpA	bglP	Pmu	-58..-45	`AGAAAACGTTTAC`	`7.854830`
CcpA	alsS	Bha	-101..-114	`AGAAAGCGTTTTT`	`7.317800`
CcpA	alsS	Spn	-54..-67	`TGGAAACGTTCTC`	`8.584110`
CcpA	alsS	Sau	-28..-15	`TGAAAGCGATCCA`	`6.858070`
CcpA	alsS	Eco	-20..-33	`TGATAACGGTAAC`	`7.991990`
CcpA	alsS	EcZ	-20..-33	`TGATAACGGTAAC`	`7.991990`
CcpA	alsS	Ecs	-20..-33	`TGATAACGGTAAC`	`7.991990`
CcpA	alsS	Pmu	-287..-274	`CGAAAACGTTTTC`	`8.230480`
CcpA	alsS	Nme	-215..-202	`TGAAAGATTTTTC`	`7.054120`
CcpA	alsS	NmA	-215..-202	`TGAAAGATTTTTC`	`7.054120`
CcpA	alsS	Mlo	-122..-135	`AGAATGCGTTTCC`	`7.003400`
CcpA	alsS	Dra	-210..-197	`TGAAAGCGTTACC`	`11.216890`
CcpA	amyE	Bsu	-124..-111	`TGTAAGCGTTAAC`	`11.243550`
CcpA	amyE	Bha	-101..-88	`AGTAAACGTTTTC`	`8.379050`
CcpA	amyE	Lla	-166..-153	`TGAAAGCGTTATG`	`8.906200`
CcpA	amyE	Spn	-58..-71	`TGCAAGCGTTTGC`	`9.199410`
CcpA	amyE	Lin	-57..-44	`TGTAATCGTAATC`	`7.171720`
CcpA	amyE	Sty	-218..-231	`TGAAAACGATTTT`	`7.281170`
CcpA	amyE	Ccr	-281..-268	`TGCAAACGATGAC`	`6.835620`
CcpA	amyE	Dra	-26..-39	`TGGGAGCGGTTCC`	`7.905850`
CcpA	glpF	Bha	-158..-145	`TGACAGCGTTTAC`	`8.894550`
CcpA	glpF	Spn	-139..-126	`TAAAAACGCTTAC`	`7.192520`
CcpA	glpF	Lin	-211..-198	`TGACAGCGTTTTC`	`9.650640`
CcpA	rbsR	Bsu	-100..-113	`TGAAAACGCTTTA`	`10.077540`
CcpA	rbsR	Bha	-31..-18	`AGAAAACGTTTTC`	`8.610920`
CcpA	rbsR	Cac	-245..-258	`TGTTAACGTTAAC`	`7.697490`
CcpA	rbsR	Lla	-92..-79	`TGAAAAGGTTTAC`	`6.953790`
CcpA	rbsR	Spy	-104..-91	`TGAAAACTTTTTC`	`8.625900`
CcpA	rbsR	Spn	-125..-112	`TGTAATCGTTTTC`	`9.133490`
CcpA	rbsR	Lin	-184..-171	`TGGTAACGTTACC`	`6.878030`
CcpA	rbsR	Eco	-158..-171	`TGAAACCGGTTTC`	`9.427990`
CcpA	rbsR	EcZ	-158..-171	`TGAAACCGGTTTC`	`9.427990`
CcpA	rbsR	Ecs	-110..-97	`TGTAACCGTTTCC`	`8.118870`
CcpA	rbsR	Ype	-34..-21	`TGTAAGCGGTTAC`	`11.765340`
CcpA	rbsR	Vch	-175..-188	`TGCAAACGTTCCC`	`6.912740`
CcpA	rbsR	Pae	-84..-71	`TGAAACCGGTTTC`	`9.427990`
CcpA	rbsR	Hin	-185..-172	`TGTAAACGATTAC`	`8.963150`
CcpA	rbsR	Pmu	-206..-193	`TGAAAACGGTTAC`	`10.620390`
CcpA	rbsR	Xfa	-38..-25	`TGAAAACCGTTTC`	`7.817740`
CcpA	rbsR	Rso	-35..-22	`TGTAAACGTTTAC`	`10.325890`
CcpA	rbsR	Atu	-93..-80	`CGTAAACGTTTAC`	`7.242520`
CcpA	rbsR	Sme	-131..-118	`CGGAAGCGCTTGC`	`7.054780`
CcpA	rbsR	Bme	-53..-66	`TGGAAGCCCTTTC`	`8.621120`
CcpA	rbsR	Mlo	-139..-126	`TGAAATCGTTTTC`	`9.365360`
CcpA	rbsR	Ccr	-49..-36	`TGCAAGAGTTTTC`	`8.292520`
CcpA	rbsR	Tma	-178..-165	`TGAAAACATTTTC`	`8.135550`
CcpA	araB	Ype	-202..-215	`TGATAGCGCTCTA`	`7.348180`
CcpA	mmgA	Bsu	-36..-23	`TGTAAGCGCTGTC`	`11.830940`
CcpA	mmgA	Bha	-26..-13	`TGAAAACGCTTTA`	`10.077540`
CcpA	mmgA	Spy	-36..-23	`TGTAAGCGTTTCA`	`9.925880`
CcpA	mmgA	Pae	-15..-28	`TGGAATCGTTTAC`	`7.816470`
CcpA	mmgA	Rso	-32..-45	`GGGAAGCGCTGTC`	`8.186640`
CcpA	mmgA	Ccr	-206..-193	`TAGAAGCGGTTAC`	`7.557180`
CcpA	gntR	Bsu	-80..-67	`TGAAAGTGTTTGC`	`7.044990`
CcpA	gntR	Lla	-83..-96	`TGACAACGGTTTC`	`8.336450`
CcpA	gntR	Sty	-228..-215	`TGGAAGCATTTAC`	`7.963480`
CcpA	gntR	Nme	-27..-14	`TGAAAGCGTAAAA`	`8.454510`
CcpA	gntR	NmA	-27..-14	`TGAAAGCGTAAAA`	`8.454510`
CcpA	gntR	Mlo	-42..-55	`TGAAAACGTATAA`	`7.536850`
CcpA	gntR	Ccr	-198..-211	`TGCAAGCGCTCGC`	`7.544460`
CcpA	bglS	Bsu	-295..-282	`TGAGAGCGCTGAC`	`8.266690`
CcpA	bglS	Bha	-126..-113	`TGAAAGCGCTTTC`	`12.972660`
CcpA	bglS	Mlo	-60..-47	`TGGAAGCGGTTCA`	`9.427580`
CcpA	acoA	Bha	-253..-240	`TGTAAGCGCTTTA`	`11.222490`
CcpA	acoA	Spy	-223..-210	`TGAAAGAGGTTTT`	`7.134760`
CcpA	acoA	Bme	-228..-215	`TGAAAGCCGTTCC`	`8.179940`
CcpA	ydhO	Bsu	-78..-65	`TGTAAGCGTTTTC`	`12.458800`
CcpA	ydhO	Lla	-257..-244	`AGAAACCGCTTTC`	`6.944420`
CcpA	ydhO	Spn	-62..-49	`TGACAACGCTTTC`	`8.555810`
CcpA	ydhO	Lin	-172..-185	`TAAAAACGCTTAC`	`7.192520`
CcpA	yxjC	Bsu	-84..-71	`TGAAAGCGCTTTC`	`12.972660`
CcpA	yxjC	Cac	-31..-18	`AGAAAACGTTACC`	`7.137140`
CcpA	yxjC	Sty	-46..-33	`TGATAGCGTTCTA`	`7.066190`
CcpA	treP	Bsu	-252..-239	`TGAAAGCGTTGAC`	`11.024730`
CcpA	treP	Bha	-222..-209	`TGAAAGCGTTGAC`	`11.024730`
CcpA	treP	Cac	-201..-188	`TGAAAAGGTTTTC`	`7.709880`
CcpA	treP	Spy	-209..-196	`TGAAAACGCTTGA`	`8.035830`
CcpA	treP	Spn	-168..-155	`TAAAAACGGTTAC`	`6.973160`
CcpA	treP	Lin	-170..-157	`TGCAACCGTTTTC`	`7.915810`
CcpA	treP	Eco	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	treP	EcZ	-121..-108	`TGAAAGCGATCAC`	`8.634900`
CcpA	treP	Ecs	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	treP	Vch	-125..-112	`TGCAAACGTTCCC`	`6.912740`
CcpA	treP	Pmu	-58..-45	`AGAAAACGTTTAC`	`7.854830`
CcpA	treP	Bsu	-252..-239	`TGAAAGCGTTGAC`	`11.024730`
CcpA	treP	Bha	-222..-209	`TGAAAGCGTTGAC`	`11.024730`
CcpA	treP	Cac	-201..-188	`TGAAAAGGTTTTC`	`7.709880`
CcpA	treP	Spy	-209..-196	`TGAAAACGCTTGA`	`8.035830`
CcpA	treP	Spn	-168..-155	`TAAAAACGGTTAC`	`6.973160`
CcpA	treP	Lin	-170..-157	`TGCAACCGTTTTC`	`7.915810`
CcpA	treP	Eco	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	treP	EcZ	-121..-108	`TGAAAGCGATCAC`	`8.634900`
CcpA	treP	Ecs	-98..-85	`TGAAACCGGTTTC`	`9.427990`
CcpA	treP	Vch	-125..-112	`TGCAAACGTTCCC`	`6.912740`
CcpA	treP	Pmu	-58..-45	`AGAAAACGTTTAC`	`7.854830`
CcpA	msmX	Bsu	-34..-21	`AGAAAGCGTTTAC`	`9.231650`
CcpA	msmX	Bha	-104..-117	`TGAAAGCGTTTTA`	`11.172370`
CcpA	msmX	Lla	-56..-43	`AGAAAACGTTTAC`	`7.854830`
CcpA	msmX	Spy	-104..-91	`TGAAAGCGCTATT`	`9.843560`
CcpA	msmX	Spn	-40..-53	`TGAAAACGCTTTA`	`10.077540`
CcpA	msmX	Lin	-160..-173	`TGAAAGATTTTTC`	`7.054120`
CcpA	msmX	Vch	-243..-230	`TGAAAGCGTTACG`	`7.891580`
CcpA	msmX	Atu	-114..-101	`TGAAAGCGGATAG`	`7.169290`
CcpA	msmX	Mlo	-84..-71	`TGCAAGCGGATTA`	`8.282840`
CcpA	araE	Bsu	-37..-24	`TGAAAACGCTTTA`	`10.077540`
CcpA	araE	Bha	-27..-14	`AGAAAGCGGTATA`	`8.072910`
CcpA	araE	Cac	-91..-78	`TGAAAGTGATTTC`	`7.723960`
CcpA	araE	Lla	-72..-59	`GGAAAGCGGTATC`	`9.210770`
CcpA	araE	Spy	-169..-156	`TGAGAACGCTTTA`	`7.037510`
CcpA	araE	Spn	-110..-97	`TAAAAACGCTTTC`	`7.948610`
CcpA	araE	Sau	-158..-145	`TAAAAGCGTTTTA`	`7.525140`
CcpA	araE	Lin	-133..-120	`TGTAAGCGATAAA`	`8.362510`
CcpA	araE	Cgl	-284..-271	`AGGAAGCGCTTAA`	`7.202540`
CcpA	araE	Mtu	-109..-122	`TGGAAGCGCGTTA`	`7.714270`
CcpA	araE	MtC	-76..-89	`TGGAAGCGCGTTA`	`7.714270`
CcpA	araE	Eco	-279..-266	`TGAAACCGATTAC`	`7.246530`
CcpA	araE	EcZ	-229..-242	`TGGGAGCGGTTAC`	`8.164380`
CcpA	araE	Ecs	-157..-170	`TGAAAGCGCAGGA`	`7.000190`
CcpA	araE	Ype	-19..-6	`TGGATGCGATTTC`	`8.565410`
CcpA	araE	Sty	-64..-77	`TGTCAGCGCTTTA`	`8.182460`
CcpA	araE	Pae	-100..-87	`TGATAGCGCTTTG`	`7.478110`
CcpA	araE	Nme	-245..-232	`GGTAAGCGTTTAC`	`8.619340`
CcpA	araE	NmA	-109..-96	`GGTAAGCGTTTAC`	`8.619340`
CcpA	araE	Rso	-62..-75	`TGAAATCGGTTTA`	`7.909690`
CcpA	araE	Hpy	-66..-79	`TGATAGCGCATAA`	`7.026420`
CcpA	araE	Bme	-94..-107	`TGCAAGCGGAAAA`	`7.067590`
CcpA	araE	Ccr	-47..-60	`TGGTAGCGGTCAC`	`7.098230`
CcpA	araE	Nos	-125..-112	`TGAAAGCCTTTAA`	`6.857540`
CcpA	acsA	Bsu	-86..-99	`TGAAAACGCTTTA`	`10.077540`
CcpA	acsA	Bha	-104..-91	`TGGTAGCGCTTAC`	`9.254530`
CcpA	acsA	Lla	-63..-76	`TGTAAATGTTTTC`	`7.478010`
CcpA	acsA	Dra	-81..-94	`TGAAAGCGTCGCC`	`7.818910`
CcpA	lcfA	Bsu	-40..-27	`TGTAAACGCTTTC`	`11.363970`
CcpA	lcfA	Bha	-104..-91	`TGGTAGCGCTTAC`	`9.254530`
CcpA	lcfA	Mtu	-54..-41	`TGAAAGCGGCAGC`	`7.305140`
CcpA	lcfA	MtC	-37..-24	`TGTACGCGGTTCA`	`6.970870`
CcpA	lcfA	Mle	-100..-113	`TGATAGCGAATAC`	`6.899990`
CcpA	lcfA	Nme	-43..-56	`TGAAAACCGTTTC`	`7.817740`
CcpA	lcfA	NmA	-43..-56	`TGAAAACCGTTTC`	`7.817740`
CcpA	lcfA	Ccr	-10..-23	`TGAAAACGCAAAA`	`7.359680`
CcpA	lcfA	Nos	-269..-282	`TGTAAGCATTTAC`	`8.524410`
CcpA	levD	Bsu	-79..-66	`TGAAAACGCTTAA`	`9.321450`
CcpA	levD	Spy	-251..-238	`TGAAAACGGTTCA`	`8.843560`
CcpA	levD	Spn	-36..-23	`TGAAAGCGCAAAC`	`10.254800`
CcpA	levD	Lin	-185..-172	`AGAAAACGCTTGC`	`6.851200`
CcpA	levD	Sty	-78..-91	`TGTAACCGTTTAA`	`6.859100`
CcpA	yxkJ	Bsu	-51..-38	`TGTTAACGCTTTC`	`9.194730`
CcpA	yxkJ	Sty	-71..-58	`TGAAAACGCCTTA`	`7.130250`
CcpA	iolB	Bha	-280..-267	`TGAAAACGATTTC`	`9.951110`