CodY

We searched for CodY binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for CodY.

Transcription Factor Regulated gene organism position cis-element score
CodY ureA Bha -130..-119 AAAAAATAGGA 6.223780
CodY ureA Sau -17..-6 AAAAAAGAGGT 5.804680
CodY ureA Hin -86..-75 AAAAATTCTGA 8.049090
CodY hag Bsu -95..-106 AAAAAGCTTGC 5.659120
CodY hag Cac -77..-88 AAAAATTAGGT 5.902270
CodY hag Lin -63..-74 AAACAACCTGA 5.966450
CodY hag Eco -129..-118 AAAATGGCTGT 5.547350
CodY hag EcZ -129..-118 AAAATGGCTGT 5.547350
CodY hag Ecs -129..-118 AAAATGGCTGT 5.547350
CodY hag Hpy -11..-22 AAAATAACTGA 5.587260
CodY hag Bme -20..-31 AAACAATCTGA 5.587260
CodY hag Ccr -276..-287 GAAAAGGCTGA 6.345640
CodY hag Aae -18..-7 AAAAAGGAGGT 6.183870
CodY rapC Bsu -123..-134 AAAAAGGCGGA 7.911590
CodY rapC Bha -215..-226 AAAAAACCTGC 6.209360
CodY rapC Cac -201..-190 AAAAAATCGGA 7.153210
CodY rapC Lla -16..-5 AAAAATAAGGA 6.700560
CodY rapC Lin -44..-33 AATAAAACTGA 5.587260
CodY rapC Eco -209..-220 AAAAATAATGA 7.119660
CodY rapC Pmu -145..-134 AAAAAATAGGA 6.223780
CodY rapC Atu -104..-115 AAAACAGCGGA 5.547350
CodY rapC Mlo -235..-224 AACAAGCCTGT 5.547350
CodY rapC Rpr -154..-143 TAAAATACTGA 6.064040
CodY rapC Rco -279..-268 AAAAATGCAGA 6.686140
CodY rapC Ctr -154..-165 AAAAAACTTGA 7.022070
CodY rapC Cpn -279..-290 AAAGAGCCTGT 5.547350
CodY rapC Tpa -37..-26 AAAAAAACCGA 5.830170
CodY rapC Bbu -220..-231 AAAAAGAATGT 6.223780
CodY rapC Syn -3..-14 AAAAATCTGGA 7.079750
CodY rapC Nos -231..-242 AAAAACTCTGA 6.628460
CodY rapC Fnu -183..-194 AAAAAACTTGT 6.223780
CodY dppA Bsu -50..-61 AAAAAAGAGGA 6.602970
CodY gabP Bsu -80..-91 AAGAAGCCTGT 5.547350
CodY gabP Cac -121..-110 AAAAATGAAGA 5.756710
CodY gabP Sau -20..-9 AAAAATGAGGT 6.281460
CodY gabP Lin -194..-183 AAAAAGTTTGT 6.223780
CodY gabP Mge -203..-192 AAAAAAGATGA 7.022070
CodY gabP Eco -134..-145 AAAAAAGCAGA 6.209360
CodY gabP EcZ -134..-145 AAAAAAGCAGA 6.209360
CodY gabP Ecs -134..-145 AAAAAAGCAGA 6.209360
CodY gabP Ype -20..-9 AAAAAGACGGG 5.790260
CodY gabP Sty -93..-104 AAAACGCCTGA 6.345640
CodY gabP Atu -35..-46 AATAAGCCGGA 5.926540
CodY gabP Rco -15..-4 AAAAATGGGGA 6.135900
CodY gabP Fnu -105..-94 AAAAAGATGGA 6.602970
CodY acsA Bsu -43..-32 AAAGAGCCTGT 5.547350
CodY acsA Lla -197..-208 AAAAATTATGA 7.119660
CodY acsA Lin -217..-228 AAAAAAGTGGA 6.602970
CodY acsA Ype -218..-207 CAAAATGCGGA 6.024130
CodY acsA Pae -264..-253 AAAAAGGCTGC 6.588550
CodY acsA Pmu -119..-130 AAAAATGCTGA 8.428280
CodY acsA Hpy -185..-196 AAAAAGGGTGA 6.457410
CodY acsA Aae -17..-6 AAAAAGGAGGT 6.183870
CodY ybgE Bsu -48..-37 AAAAAGACTGA 7.951500
CodY ybgE Lla -135..-146 AAAATTACTGA 6.064040
CodY ybgE Spy -25..-14 AAAAAAGCAGA 6.209360
CodY ybgE Lin -38..-27 AATAATTCTGA 6.064040
CodY ybgE Eco -49..-60 AACAAGTCGGA 5.547350
CodY ybgE EcZ -49..-60 AACAAGTCGGA 5.547350
CodY ybgE Ecs -49..-60 AACAAGTCGGA 5.547350
CodY ybgE Sty -78..-89 AAAAAAGCCGA 6.209360
CodY ybgE Pmu -66..-55 GAAAATGCGGA 6.024130
CodY ybgE Xfa -3..-14 AAAATTCCTGT 5.644940
CodY ybgE NmA -178..-167 ATAAAGTCTGA 5.966450
CodY ybgE Rso -35..-46 ACAAAGGCGGA 5.926540
CodY ybgE Rco -198..-187 AAAAAAATTGT 5.844590
CodY ilvB Bsu -17..-6 AAAAAGGAGGA 6.982160
CodY ilvB Bha -255..-244 AAAAAACAGGA 6.602970
CodY ilvB Cac -104..-93 AAAAATATTGA 7.119660
CodY ilvB Spn -63..-52 AAAAATTTTGA 7.119660
CodY ilvB Sau -248..-259 AAAAATGCTAA 5.941770
CodY ilvB Eco -177..-188 AAAAATGCAGA 6.686140
CodY ilvB EcZ -183..-194 AAAAATGCAGA 6.686140
CodY ilvB Ecs -225..-236 AAAAATGCAGA 6.686140
CodY ilvB Ype -161..-150 AGAAATTCTGA 6.064040
CodY ilvB Hin -75..-86 AAAAAATTTGT 5.844590
CodY ilvB Pmu -218..-229 AAAAAAGCGGC 5.790260
CodY ilvB Rso -240..-229 AAAAATGCGGG 6.267040
CodY ilvB Mlo -19..-30 AAAAAAACCGA 5.830170
CodY citB Bsu -116..-105 AAAAACATTGA 5.699030
CodY citB Xfa -205..-216 AAAAAATATGT 5.844590
CodY citB Rpr -128..-139 AAAAATGTAGA 5.756710
CodY citB Fnu -37..-26 AAAAATACTTA 5.562580
CodY citB Dra -238..-227 AAAAATACGGT 6.831700
CodY comK Bsu -77..-66 AAAAAACCTGT 7.153210
CodY comK NmA -13..-2 AAAAAGGATGA 7.401260
CodY ilvA Bsu -163..-174 AAAAAAGATGA 7.022070
CodY ilvA EcZ -190..-179 AAACAACCGGA 5.547350
CodY ilvA Ecs -190..-179 AAACAACCGGA 5.547350
CodY ilvA Mlo -189..-178 AAAAACCTTGA 6.078220
CodY ilvA Nos -260..-271 AAAACAACTGA 5.587260
CodY ilvA Tma -150..-161 AAAAAGGAGGT 6.183870
CodY ilvA Fnu -230..-219 AAAAAGTTGGA 6.602970
CodY srfAA Bsu -192..-181 AAAAAACGGGA 5.659120
CodY srfAA MtC -29..-18 AACAATCCTGA 6.443230
CodY srfAA Pae -124..-113 AAAAAAACCGA 5.830170
CodY srfAA Nos -105..-116 AAAAATGTTGT 6.700560
CodY ilvD Bsu -65..-54 AAATAAACTGA 5.587260
CodY ilvD Spn -177..-166 AAGAAAGCGGA 5.547350
CodY ilvD Sau -248..-259 AAAAAAGTTGA 7.022070
CodY ilvD Ype -232..-243 AAAGAACCTGA 5.966450
CodY ilvD Nme -225..-214 AAAAATCAGGA 7.079750
CodY ilvD Bme -207..-196 GAAAATCCGGA 6.024130
CodY ilvD Mlo -18..-7 ACAAATACGGA 5.644940