We searched for ComA binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for ComA.
| ComA |
rapA |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapA |
Bha |
-101..-86 |
CGCGGACTTCCGACA |
6.673960 |
| ComA |
rapA |
Cac |
-41..-56 |
TACGGGCTCCTTAAA |
6.697350 |
| ComA |
rapA |
Sty |
-112..-97 |
TGCGGGTTACAGACT |
6.981370 |
| ComA |
rapA |
Pae |
-175..-190 |
TTCGTGAACCCGCGC |
6.685130 |
| ComA |
rapA |
Rso |
-225..-210 |
GGCGCGCCGCCGCGT |
6.696670 |
| ComA |
rapA |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapA |
Mlo |
-34..-49 |
TGCAGGAACTCGAAT |
6.839360 |
| ComA |
rapA |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapA |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapA |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
rapA |
Dra |
-79..-64 |
CGCGGTCCGGCGCAG |
6.809190 |
| ComA |
rapC |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapC |
Bha |
-101..-86 |
CGCGGACTTCCGACA |
6.673960 |
| ComA |
rapC |
Cac |
-41..-56 |
TACGGGCTCCTTAAA |
6.697350 |
| ComA |
rapC |
Sty |
-112..-97 |
TGCGGGTTACAGACT |
6.981370 |
| ComA |
rapC |
Pae |
-175..-190 |
TTCGTGAACCCGCGC |
6.685130 |
| ComA |
rapC |
Rso |
-225..-210 |
GGCGCGCCGCCGCGT |
6.696670 |
| ComA |
rapC |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapC |
Mlo |
-34..-49 |
TGCAGGAACTCGAAT |
6.839360 |
| ComA |
rapC |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapC |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapC |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
rapC |
Dra |
-79..-64 |
CGCGGTCCGGCGCAG |
6.809190 |
| ComA |
rapE |
Bsu |
-91..-106 |
TTCGGCTAACCGCAA |
8.115490 |
| ComA |
rapE |
Bha |
-101..-86 |
CGCGGACTTCCGACA |
6.673960 |
| ComA |
rapE |
Cac |
-41..-56 |
TACGGGCTCCTTAAA |
6.697350 |
| ComA |
rapE |
Sty |
-112..-97 |
TGCGGGTTACAGACT |
6.981370 |
| ComA |
rapE |
Pae |
-175..-190 |
TTCGTGAACCCGCGC |
6.685130 |
| ComA |
rapE |
Rso |
-225..-210 |
GGCGCGCCGCCGCGT |
6.696670 |
| ComA |
rapE |
Sme |
-135..-150 |
AGCGCTATGTCGCAA |
7.581170 |
| ComA |
rapE |
Mlo |
-34..-49 |
TGCAGGAACTCGAAT |
6.839360 |
| ComA |
rapE |
Ccr |
-34..-19 |
TGCGGACCGCCTCGA |
8.014020 |
| ComA |
rapE |
Ctr |
-157..-172 |
TGCGATACACTGCAA |
8.004480 |
| ComA |
rapE |
Nos |
-74..-89 |
TGCGGAATACCGTCA |
8.390750 |
| ComA |
rapE |
Dra |
-79..-64 |
CGCGGTCCGGCGCAG |
6.809190 |
| ComA |
srfAA |
Bsu |
-166..-181 |
AGCAGGCTGCCGTCA |
6.945650 |
| ComA |
srfAA |
MtC |
-265..-280 |
CGCTGGATGCCGACC |
6.923290 |
| ComA |
srfAA |
Eco |
-125..-110 |
TGCGTCTTACCGGCA |
6.826790 |
| ComA |
srfAA |
EcZ |
-48..-33 |
TGGTGGCAGTCGAAA |
6.808360 |
| ComA |
srfAA |
Pae |
-156..-141 |
CGAGGGCTTCCGTAA |
6.900390 |
| ComA |
srfAA |
Rso |
-248..-263 |
GGCGTGATGCCGGTC |
7.071400 |
| ComA |
srfAA |
Atu |
-128..-113 |
TTCAGGCAGCCGAAT |
7.315600 |
| ComA |
srfAA |
Mlo |
-192..-207 |
CGCGTGCCACCGGCA |
7.086090 |