We searched for RocR binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for RocR.
| RocR |
rocD |
Bsu |
-174..-159 |
GCAAAAGAATTTTGC |
13.651370 |
| RocR |
rocD |
Bha |
-199..-214 |
GAAAAAATAATTTGC |
8.245240 |
| RocR |
rocD |
MtC |
-16..-31 |
GCAAACTCATTCCGC |
8.940660 |
| RocR |
rocD |
Nme |
-285..-270 |
GCAAAAAAGTACCGC |
6.897930 |
| RocR |
rocD |
Nos |
-139..-154 |
GGAAAATAATTTTGT |
9.036270 |
| RocR |
rocA |
Bsu |
-212..-197 |
GCAAAATAATTTTGC |
13.748960 |
| RocR |
rocA |
Spn |
-82..-67 |
TCTCAAAAATTTTGC |
6.815570 |
| RocR |
rocA |
Sau |
-200..-215 |
GCAAAATACAATAGC |
6.995520 |
| RocR |
rocA |
Lin |
-178..-163 |
GCAAAAAAATTGTTT |
6.817350 |
| RocR |
rocA |
Eco |
-33..-18 |
GCAACAGAAATGTGA |
7.843560 |
| RocR |
rocA |
Pae |
-158..-173 |
GCATGGACATTCTGC |
6.478830 |
| RocR |
rocA |
Mlo |
-40..-25 |
GCACCTGAAATCTGC |
6.478830 |
| RocR |
rocA |
Nos |
-109..-94 |
GCAACTAAATTTTGT |
7.075900 |
| RocR |
rocR |
Bsu |
-122..-107 |
GCAAAAACATTCTGA |
11.151650 |
| RocR |
rocR |
Bha |
-159..-174 |
GCAAAAGAACATTTC |
7.437670 |
| RocR |
rocR |
Ype |
-75..-60 |
GCAATAAAATTTAGG |
7.075900 |