TnrA

We searched for TnrA binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for TnrA.

Transcription Factor Regulated gene organism position cis-element score
TnrA nasB Bsu -135..-152 ATTCAGAAAATGTAAAA 6.190190
TnrA nasB Ype -128..-111 TATCAAAAAAGCTTAAA 6.057360
TnrA nasB Aae -24..-41 TTGCAAAAAACGTGCCA 6.163510
TnrA ycsF Bsu -128..-145 TGTCAGAAAACCTACCA 13.361480
TnrA ycsF Bha -41..-24 TGGAAAAAGAATTGACA 7.395440
TnrA yccC Bsu -84..-67 TGAGAGAAAAGCTGACT 9.218520
TnrA yccC Sty -78..-95 TGGCACAAAAACAGACA 9.782270
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.476150
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.143940
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.555080
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.083280
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.476150
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.143940
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.555080
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.083280
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.476150
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.143940
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.973380
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.555080
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.083280
TnrA gabP Bsu -86..-103 TGTAAGAAAATATACCA 13.219080
TnrA gabP Lla -57..-40 TGGTATAATAATTAACA 6.744800
TnrA gabP Eco -128..-145 TGTAATAAAAAAGCAGA 5.964720
TnrA gabP EcZ -128..-145 TGTAATAAAAAAGCAGA 5.964720
TnrA gabP Ecs -128..-145 TGTAATAAAAAAGCAGA 5.964720
TnrA gabP Ype -82..-65 TGTTAAAAAAACCGCCG 6.727080
TnrA gabP Fnu -44..-27 TTTTAGAAAGTCTTCCA 6.832430
TnrA nrgA Bsu -102..-85 TGTCAGGAAATCTTACA 13.398870
TnrA nrgA Bha -138..-121 TGTCAGATATAGGCACA 6.168890
TnrA nrgA Lla -121..-138 TGTCACAAAACATAACA 11.862560
TnrA nrgA Lin -127..-110 TGTTAGATAACCTAACC 9.031340
TnrA nrgA Cgl -35..-18 TGTCACTAAAAACCACA 6.536290
TnrA nrgA Nme -236..-253 TGTAGGAAAATATACAG 6.317690
TnrA nrgA Nos -60..-43 AGTAATGAAATGTAACT 6.549300
TnrA yodF Bsu -244..-261 TGTAAGAAAAGATCACA 12.280520
TnrA glnR Bsu -82..-65 TGTTAAGAATCCTTACA 6.789710
TnrA glnR Bha -110..-93 TGTAAGAAAATCTAACA 15.194030
TnrA glnR Cac -97..-114 TGGCATAAAATAAAAAA 6.940470
TnrA glnR Lla -73..-56 TGTGAGAAAATCTCACA 13.867690
TnrA glnR Spn -59..-76 TGTTATAAAATGTAACA 12.195440
TnrA glnR Lin -148..-165 TGGAAAAACTTATGACA 6.214950
TnrA glnR Sty -225..-242 TGTCACGAAAAGTGAGG 6.998610
TnrA glnR Vch -165..-182 TGAAAGAAGACATGACC 6.620530
TnrA glnR Syn -103..-86 TGGGAGAAAATCGTCCT 7.141060
TnrA glnR Fnu -87..-70 TGTCAGAAAATTAGAAA 7.646050
TnrA pel Bsu -43..-26 TGGAATAAAATCTCACA 12.248950
TnrA alsT Bsu -240..-223 GGGAAGAAATGATTACA 7.236650
TnrA alsT Bha -111..-128 CGTTAGGAAGTCTAACA 9.311090
TnrA alsT Nme -92..-109 AATCAGAAAAATTTACA 6.073100
TnrA alsT NmA -92..-109 AATCAGAAAAATTTACA 6.073100
TnrA alsT Fnu -108..-125 TCTAAAAAAATATAAAA 6.381660
TnrA oppA Bsu -231..-214 TGGAAGAAAAACTAACG 12.291350
TnrA oppA Lla -126..-109 TTTCAGAAAACATAACC 7.994340
TnrA oppA Lin -153..-170 CGTAATCAAAATTTACA 6.105370
TnrA oppA Sty -78..-95 TGTCTGAAAAAATGTCT 6.040930
TnrA oppA Mlo -75..-92 TGTCATCAAGAATTACA 6.165910
TnrA oppA Bbu -27..-44 TGTTTTAAAATTTAACT 6.106390
TnrA ywrD Bsu -66..-83 CGGCAGAAAAACTGACG 11.323880
TnrA ywrD Nme -180..-197 TGTAGGATAATATCACT 6.304630
TnrA ywrD Nos -135..-152 TGGGATAAAACCTAGCT 6.053830
TnrA tnrA Bsu -82..-65 TGTTAAGAATCCTTACA 6.789710
TnrA tnrA Bha -110..-93 TGTAAGAAAATCTAACA 15.194030
TnrA tnrA Cac -97..-114 TGGCATAAAATAAAAAA 6.940470
TnrA tnrA Lla -73..-56 TGTGAGAAAATCTCACA 13.867690
TnrA tnrA Spn -59..-76 TGTTATAAAATGTAACA 12.195440
TnrA tnrA Lin -148..-165 TGGAAAAACTTATGACA 6.214950
TnrA tnrA Sty -225..-242 TGTCACGAAAAGTGAGG 6.998610
TnrA tnrA Vch -165..-182 TGAAAGAAGACATGACC 6.620530
TnrA tnrA Syn -103..-86 TGGGAGAAAATCGTCCT 7.141060
TnrA tnrA Fnu -87..-70 TGTCAGAAAATTAGAAA 7.646050
TnrA nasD Bsu -135..-152 ATTCAGAAAATGTAAAA 6.190190
TnrA nasD Ype -128..-111 TATCAAAAAAGCTTAAA 6.057360
TnrA nasD Aae -24..-41 TTGCAAAAAACGTGCCA 6.163510
TnrA ywlF Bsu -154..-137 TGTCAGAAAATCTGCAA 11.736100
TnrA ywlF Lin -245..-262 TGCAACAAAATGTCGCA 7.163110
TnrA glnQ Bsu -11..-28 TATCAGAAAATTTGACC 7.997900
TnrA glnQ Cac -157..-174 AGGTATAAAAAATACCA 7.096340
TnrA glnQ Spy -80..-97 TGTCATAAAACATAACA 11.656560
TnrA glnQ Spn -32..-15 TGTTATAAAATATAACA 12.068450
TnrA glnQ Ecs -276..-293 GGTGCGAAAATGAAACA 6.199350
TnrA glnQ Nos -64..-47 AGTAAGGAAAAATGACT 6.721480
TnrA nasA Bsu -98..-81 TGTCACAAAAACTTACA 12.896330
TnrA nasA Bha -63..-80 TGGGAGGATATCTTACA 8.655530
TnrA nasA Sau -17..0 TGAAAGAAGGGATAACA 6.606650
TnrA nasA Mtu -18..-1 CGACAGGAGACCTAACC 6.172240
TnrA nasA MtC -18..-1 CGACAGGAGACCTAACC 6.172240
TnrA nasA Eco -167..-184 TGTTACTAAATGTAACT 7.615780
TnrA nasA EcZ -167..-184 TGTTACTAAATGTAACT 7.615780
TnrA nasA Ecs -167..-184 TGTTACTAAATGTAACT 7.615780