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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | lytF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| lytF | cwlE, yhdD | - | 1011076..1012542 | gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin) (CWBP49') | COG0791 |
| Operon evidence: | Northern blotting (1.5 kb transcript) |
|---|---|
| Reference: | Ohnishi R, et al. (1999), Margot P, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigD | Promoter | -42:+12 | 1012575..1012628 | TAAAAAGGCAAAACGATGAGACAAATGTGCCGATATAAAAAAGAAACAGCAAAT |
Margot P, et al. (1999): DB SDS-PAGE Ohnishi R, et al. (1999): PE DB NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAACTGTGCGGCCTTAACGGCTGTACAGTTTTTATTAGAGCCT >>>>>>>>>> <<<<<<<<<< |
lytF |
|