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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | tlpA-mcpA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| tlpA | - | 3207319..3209307 | methyl-accepting chemotaxis protein | COG0840 | mcpA-BAC-2 | |
| mcpA | - | 3205208..3207193 | methyl-accepting chemotaxis protein | COG0840 | mcpA-BAC-1 mcpA-BAC-2 mcpA-BAC-3 x0462-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Hanlon DW & Ordal GW (1994) |
| Comments: | internal promoter suspected (but not shown experimentally) in front of mcpA |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigD | Promoter | ND | 3209328..3209376 | TTTCAATGTAATTTAAAGGAAGATCCGCCGATATAATTTGTAAATTATT |
Hanlon DW & Ordal GW (1994): HM |
| SigD | Promoter | ND | 3207209..3207260 | TTTTGCTGTATATATTTACCCATTTCCAGCCGATATGAAGGGTAGCATAAAA |
Hanlon DW & Ordal GW (1994): HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CTTAACACCCAAGCTTGTTGCGCTTGGGTGTTTTTTTTAGTTTTT >>>>>>>>> <<<<<<<<< |
mcpA |
|