Regulated Operon: ycbCDEFGHJ

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ycbC
+ 267881..268807
COG0329 ycbC-BAC  
ycbD
+ 268837..270303
COG1012 ycbD-BAC  
ycbE
+ 270387..271754
COG0477  
ycbF
+ 271791..273158
COG4948  
ycbG
+ 273228..273929
COG2186  
ycbH
+ 274020..275552
COG2721  
ycbJ
+ 275829..276749
COG3173  

Operon evidence: Northern blotting (8.3 kb transcript)
Reference: Hosoya S, et al. (2002)
Comments: Internal promoter in front of ycbG, leading to a 2.3 kb ybcGH transcript. Measured mRNA transcripts suggest that readthrough terminators may exist behind ycbG and ycbH, leading to a 5.9 kb ybcCDEFG transcript, a 0.8 kb ybcG transcript, a 7.4 ybcCDEFGH transcript, and a 2.3 kb ybcGH transcript. Northern blotting results in BSORF various transcripts in this region.


Promoters

No Data

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CGAGACCCTCGTCCTTTGCATAGGACGGGGGTTTTTTGTGTTTCTT
     >>>>>>>>>>      <<<<<<<<<<
277040..277065
291..316
-19.5
ycbJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai