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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yfmCDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yfmC | - | 825124..826071 | COG4594 | |||
| yfmD | - | 824051..825052 | COG0609 | |||
| yfmE | - | 823053..824054 | COG0609 | |||
| yfmF | - | 822240..823040 | COG1120 |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | BSORF, Baichoo N, et al. (2002) |
| Comments: | Northern blotting results in BSORF show the following transcripts in this region: yfmDEF, yfmCDEF, yfmC, yfmBC, yfmB |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| Fur | Negative | ND | 826079..826128 | ATAGTGTTACATGTGATAATGATTCTCATTACTAAATCTGAAAAAAGGAA |
Baichoo N, et al. (2002): FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGAGAAGCGAGGGGAATCCTTGCTTCTTCGTTTTTGCA >>>>>>> <<<<<<< |
yfmC |
|