Regulated Operon: yycFGHIJ-yyxA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yycF
- 4152719..4153426
COG0745 yycF-BAC  
yycG
- 4150876..4152711
COG5002 vicK-STA  
yycH
- 4149519..4150886
COG4863  
yycI
- 4148690..4149532
COG4853  
yycJ
- 4147862..4148668
COG1235 yycJ-BAC  
yyxA yycK - 4146591..4147793
COG0265  

Operon evidence: Northern blotting (7.4 kb transcript); transcriptional fusions
Reference: Fabret C & Hoch JA (1998), Fukuchi K, et al. (2000), BSORF
Comments: Internal promoter in front of yyxA, leading to a 1.4 kb transcript. A shorter (2.4 kb) yycFG transcript was also detected.


Promoters

No Data

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAGCAGTCTGGCATCGTTGCCAGGCTGTTTTGATATGCAAAA
     >>>>>>>>>>    <<<<<<<<<<
4146561..4146584
7..30
-17.6
yyxA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai