Search Tools
1.
Bacillus subtilis
Motif Location Search
This tool helps finding locations in the
Bacillus subtilis
genome matching a position specific scoring matrix calculated from the user-given list of motif sequences. For each position, the two nearest upstream and downstream open reading frames are also reported.
http://dbtbs.hgc.jp/motiflocationsearch.html
Detail Search
1. Keyword Search
Search Type
Promoter
Transcription Factor
Keyword
2. Weight Matrix Search (by sequence)
Sequence
Transcription Factor Type
Sigma
All
Clear
Transcription Factor
AbrB
AhrC
AraR
BkdR
CcpA
CodY
ComA
ComK
CtsR
DegU
FNR
Fur
GlnR
GltC
GltR
Hpr
HrcA
IolR
LevR
LexA
MntR
Mta
PerR
PucR
PurR
ResD
RocR
SigA
SigB
SigD
SigE
SigF
SigG
SigH
SigK
SigL
SigW
SigX
SinR
Spo0A
SpoIIID
TnrA
Xre
Zur
Threshold
1%
5%
10%
3. Weight Matrix Search (by weight matrix)
example
Weight Matrix
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2007
Contact:
Kenta Nakai