Regulated Operon: arsR-yqcK-arsBC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
arsR yqcJ - 2657317..2657634
COG0640K arsR-1-STA arsR-BAC x1277-BAC x1447-BAC x1694-BAC  
yqcK
- 2656816..2657256
COG0346E x1225-BAC  
arsB yqcL - 2655753..2656793
COG0798P acr3-BAC  
arsC yqcM - 2655322..2655741
COG0394T arsC-BAC arsC-STA  

Operon evidence: Northern blotting (2.4 (or 2.2) kb transcript)
Reference: Sato T & Kobayashi Y (1998), Nguyen TT, et al. (2009)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ArsR Negative -56:-39 2657706..2657723 AAATAAATTGATTTATTT Sato T & Kobayashi Y (1998): DB
SigA Promoter -50:+10 2657658..2657717 ATTGATTTATTTGCTTGCATTAATTTAAAAATCATGAGTATAATAAATACATCAAAAAAA Sato T & Kobayashi Y (1998): PE HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTAAAGGATGCATATTTATATGTGTCCTTTTTTTATTAATGT
     >>>>>>>>>    <<<<<<<<<
2655282..2655303
19..40
-13.0
 arsC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai