Transcription factor: SigA

Factor type	ND
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	TTGACA(-35)-N14-tgnTATAAT(-10)
Comment	RNA polymerase major Sigma-43 factor (Sigma A). Essential gene.
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
abnA	abnA	`2950133..2950187`	`-48:+7`	CTATTTTTTTGTCTGTACAAATTACAGCATAGTGACTACAATAAAGGGGATACCG	Raposo MP, et al. (2004): RG PE
abrB	abrB	`45214..45269`	`-48:+8`	TCTTACAATCAATAGTAAACAAAATGATTGACGATTATTGGAAACCTTGTTATGCT	Perego M, et al. (1988): PE NB RG
abrB	abrB	`45200..45257`	`-50:+8`	TAGTAAACAAAATGATTGACGATTATTGGAAACCTTGTTATGCTATGAAGGTAAGGAT	Perego M, et al. (1988): PE NB RG, binding site mutation
ackA	ackA	`3016385..3016434`	`-44:+6`	CAAGTTGACTTGAAAAGCCGACATGACAATGTTTAAATGGAAAAGTCAGA	Grundy FJ, et al. (1993): PE
acsA	acsA	`3039944..3040013`	`-52:+18`	GGTTTATATTTTAAAAATTGAGAAGAATATGAATATATACTATAATAATTGTGACAACTTCAGCAAAGGG	Grundy FJ, et al. (1994): PE
acuABC	acuA	`3040002..3040068`	`-49:+18`	AAAATATAAACCATGTTGAAAACGCTTTATAATTTGGTATTCTTAAAGAAGGCATGTATTTTTGATA	Grundy FJ, et al. (1994): PE
adaAB	adaA	`203559..203625`	`-49:+18`	ACATTCTAACCACCTTATTTTTTTCTATTTATGAGGTTATAGTGTAGTTATCAAGAATGCTAAACGG	Morohoshi F, et al. (1993): PE
addBA	addB	`1136244..1136311`	`-48:+20`	ACCAATAGATCAGATTGGTCATTTTCGTCAACATTCGATAAAATATAGAGAGATAAAAAGAGAGGGGT	Haijema BJ, et al. (1995): PE
ahpCF	ahpC	`4118845..4118891`	`-41:+6`	TATGGCTTGACAAAAAATATATATTAATTAATAATTCATATATAATT	Antelmann H, et al. (1996): PE HM
ald	ald	`3278250..3278317`	`-50:+18`	TTTCTTAATCAAACAAAGAATTTTCCAAAATATCAAGCTACACTAAAAATATCACATATACAGGAGGA	Siranosian KJ, et al. (1993): PE
alkA	alkA	`203490..203554`	`-47:+18`	GCAAGATAACAAAATGAGTAAAGATGATTATGTGATAAACTAATTTCAACCAGCGTGAGTTTTCT	Morohoshi F, et al. (1993): PE, dinucleotide primer experiment
alsSD	alsS	`3711378..3711440`	`-46:+17`	GAATCGATATTGGAGGTCAATTTCCAAAGAGTGTATAGTGAAACTTATCACAAGATATTTAAA	Renna MC, et al. (1993): PE
amhX	amhX	`325250..325308`	`-42:+17`	TTAATTATTCTGAATAGTAGCAATATGTGCTATATTATATACAGCCTATCTTCCTGTTT	Kempf B, et al. (1996): PE
amyE	amyE	`327447..327513`	`-50:+17`	TTCACTCTGCCAAGTTGTTTTGATAGAGTGATTGTGATAATTTTAAATGTAAGCGTTAACAAAATTC	Nicholson WL, et al. (1987): S1 Chambliss GH, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 p.85-89: S1
ansAB	ansA	`2456857..2456920`	`-45:+19`	ATAATAATGTCTTGCGTATTTTATTTTCCGTGTCTATAATTGCATTAAAAGTATGCGAAAAGCG	Sun DX, et al. (1991): PE
antE	antE	`2602931..2602973`	`-38:+5`	CTTTTGTATTTATTAACAAATGATGGTAAAATTTCTTCAGGAG	Wang LF, et al. (1999): S1
aprE	aprE	`1105609..1105685`	`-59:+18`	AAAATCATCTCAAAAAAATGGGTCTACTAAAATATTATTCCATCTATTACAATAAATTCACAGAATAGTCTTTTAAG	Henner DJ, et al. (1988): PE NB DP Ferrari E, et al. (1988): RG PE DP NB Park SS, et al. (1989): DP S1, in-vitro transcription assay
aprX	aprX	`1862727..1862775`	`-37:+12`	ACTTACCAAACCTATCATCTGTTCATAGAGTATACAGAGAACCTTATAA	Valbuzzi A, et al. (1999): PE DP RG
araABDLMNPQ-abfA	araA	`2948963..2949012`	`-50:+10`	AAAGATTGACAGTATAATAGTCAATTACTATAATAAAATTGTTCGTACAA	Sa Nogueira I & Ramos SS (1997): PE HM
araE	araE	`3485565..3485608`	`-39:+5`	AACATTGACAGAAAATGCAAACAAGATTATTCTATATTTGTACG	Sa Nogueira I & Ramos SS (1997): PE
araR	araR	`3485603..3485648`	`-40:+6`	AATGTTTTCTTACAAAGAACGCTGTGATATACTGAAATTTGTCCGT	Sa Nogueira I & Ramos SS (1997): PE
arfM	arfM	`3830636..3830694`	`-52:+7`	AGGCTGTGAAATACATCACTGCTGTACAGGCTCAGTCGAGCTACACTAAAGCTATCCTT	Cruz Ramos H, et al. (1995): PE Marino M, et al. (2001): PE
argCJBD-carAB-argF	argC	`1194958..1195018`	`-44:+17`	AATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAA	O'Reilly M, et al. (1994): PE Smith MC, et al. (1986): S1, mung-bean nuclease mapping
arsR-yqcK-arsBC	arsR	`2657658..2657717`	`-50:+10`	ATTGATTTATTTGCTTGCATTAATTTAAAAATCATGAGTATAATAAATACATCAAAAAAA	Sato T & Kobayashi Y (1998): PE HM
spoVFAB-asd-dapG-dapA	asd	`1745895..1745953`	`-41:+18`	AATTCGGTCATCACCCGCATATTCTATGGTAAAATAAAACGTAAAATCATAGTCAAATC	Chen NY, et al. (1993): PE
bglC	bglC	`1940523..1940589`	`-49:+18`	AGAAATTAGGTTGATAGACAATCATGAGAAAGATTTTTACAATGAGTTCGTGCTCATAAGAAGTGTA	Robson LM, et al. (1987): S1
bglPH-yxiE	bglP	`4035814..4035863`	`-47:+3`	AAAATGAAAGCGTTGACATCTCACGAATCTAGTGCTAAAGTATACCTACA	Le Coq D, et al. (1995): PE
licT-bglS	bglS	`4013730..4013782`	`-48:+5`	TTTCCCTGATGATATTGACCTAGTACAAAAAGAATGTACAATCAAGATATAGT	Schnetz K, et al. (1996): PE
blt-bltD	blt	`2716863..2716907`	`-41:+4`	CTCCTTGACTATACGGTAACCATATACCTTATGATTTGATTGTAC	Baranova NN, et al. (1999): RO
bmrU-bmr-bmrR	bmr	`2494587..2494631`	`-41:+4`	TCCGTTGACTCTCCCCTAGGAGGAGGTCTTACAGTATAAGGGATA	Baranova NN, et al. (1999): RO
bsrB	bsrB	`2096106..2096154`	`-43:+6`	CTGACCTCTTGATTAAAAGCGCCTGATGGTGTACTATATTAAAGAAGCT	Ando Y, et al. (2002): NB PE
ccdA-yneIJ	ccdA	`1923086..1923134`	`-44:+5`	TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATATAAG	Schiott T & Hederstedt L (2000): PE NB
ykuJK-ykzF-ykuL-ccpC	ccpC	`1485969..1486022`	`-44:+10`	GGGCTTGAATAAGAAACTAAGATTTTATTAGAATGGGAGATAAGAAAAACTTAT	Kim HJ, et al. (2002): PE
cdd-era	cdd	`2611373..2611426`	`-48:+6`	TTTTTAGAAATGGGCGTGAAAAAAAGCGCGCGATTATGTAAAATATAAAGTGAT	Wang PZ & Doi RH (1984): S1 RO Song BH & Neuhard J (1989): HM
cggR-gapA-pgk-tpiA-pgm-eno	cggR	`3483857..3483912`	`-42:+14`	CTTAACAGTTGAATAAACAATTCCACCCTGTTAAAATAATTAAAGAAAGCAGAAAT	Ludwig H, et al. (2001): PE
citA	citA	`1020985..1021049`	`-47:+18`	CCCTTTAAAATATTGATTATTTTTTAAATATTATATTTACTATAATAACAGAAAAGGATAGGGGG	Jin S, et al. (1994): PE
citB	citB	`1926564..1926629`	`-48:+18`	AAAAACATTGATATTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG	Whipple FW, et al. (1992): RO
citG	citG	`3390706..3390762`	`-50:+7`	AAACCTTAGTAGAGGTTATCTTTTCCTGTTAAAAAAATGATATACTGTGTTAGAGTA	Feavers IM, et al. (1988): S1 Tatti KM, et al. (1990): PE Price VA, et al. (1990): DB
citG	citG	`3390692..3390742`	`-44:+7`	TTTTCCTGTTAAAAAAATGATATACTGTGTTAGAGTATTTCATGGAGTAAG	Feavers IM, et al. (1988): S1 Tatti KM, et al. (1990): PE Price VA, et al. (1990): DB
citM-yflN	citM	`834264..834323`	`-48:+12`	ACAAAAAAACCAAATTATTTACTTGCGGTTGGTTTTCCCATACGATGGCAAAAAGGCAAG	Yamamoto H, et al. (2000): PE
citR	citR	`1020983..1021047`	`-46:+19`	CCCTATCCTTTTCTGTTATTATAGTAAATATAATATTTAAAAAATAATCAATATTTTAAAGGGAA	Jin S, et al. (1994): PE
citZ-icd-mdh	citZ	`2982446..2982511`	`-48:+18`	TATAGGTAAACATTTAACAAATGTCTGATTATTGTTTATAATGAGAATAGGCTTAAACTTAAATAA	Jin S, et al. (1994): PE
clpE	clpE	`1437923..1437966`	`-39:+5`	AGACTTGAAAGTCAAAGATAGTCAGAGTATACTATTAATCAAAG	Derre I, et al. (1999): PE
clpE	clpE	`1437804..1437846`	`-38:+5`	TGGTTTGAATGCCGTTAAGTTTGCCGTATACTAATAGTCAAAG	Derre I, et al. (1999): PE
clpP	clpP	`3546151..3546220`	`-50:+20`	AGGCCAGCTTTTTGTTTGACCTTTATTGACCAAAAATGTATCATGTAACTACATACTTACCTAAAAGGTG	Gerth U, et al. (1998): PE HM
clpX	clpX	`2886119..2886168`	`-46:+4`	AACACATTGTTACCGTCTTTTTGGAAAGTATGGTAAAATGCAATACATAC	Gerth U, et al. (1998): PE
codV-clpQY-codY	codV	`1687120..1687168`	`-43:+6`	GTATTGATTGCAACCTGAGCGCGATTTGTGATACCATTTAAAAGCCCTT	Slack FJ, et al. (1995): PE
comA-yuxO	comA	`3253456..3253517`	`-43:+19`	CGGAAACGACTTGGCACAGGCCAAGTCTTTTTTATAAAATGGAAAAGAGTGAGTAAAAGGGA	Weinrauch Y, et al. (1989): S1
comC	comC	`2865185..2865253`	`-53:+16`	TTGAATATTCCCAATTGGAGCTCAGGATGTCCATTTTGCTACAATCCATACCAGAACTCAATGAGTAAA	Mohan S, et al. (1990): PE
comEABC	comEA	`2642015..2642083`	`-50:+19`	ATGCTTTTTTATGCTTTTGCAGTACAGACGAACGTATGACATACTCGTCTACACATGAAACTGCTTTTT	Hahn J, et al. (1993): PE S1
comFABC-yvyF-flgM-yvyG-flgKL	comFA	`3643557..3643621`	`-46:+19`	TATTTTAATAGTTGGACAGAAAATATTCATTCAGGCATACTGTTTCGAAAGGAGGCGTGCTATGT	Londono-Vallejo JA, et al. (1993): PE S1
comGABCDEFG-yqzE	comGA	`2560080..2560145`	`-49:+17`	ACGTTTTCCCTGTTTGATTACCTTTTCTTCTTTTTCTACAATATGCGTTGAAAGGAGAGGGAATCA	Albano M, et al. (1989): PE
comK	comK	`1117024..1117092`	`-49:+20`	AAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAA	Van Sinderen D, et al. (1994): PE
comQX	comQ	`3256950..3257018`	`-51:+18`	AAAAACGAAAAACCTGCTGTCCTTTAAATGTCCCATTTAGTAAAATGGAATGGGAGGGGGGAAGTCGTT	Weinrauch Y, et al. (1991): PE
csbA	csbA	`3615371..3615414`	`-40:+4`	ACGATTGTCCGATTCTTCATTTTTTACTATAATCAGATCAGATG	Boylan SA, et al. (1991): PE DB RG
cspB	cspB	`984567..984634`	`-50:+18`	AATTTCAATAAGCAGTTGTTTTTTCTGAAGATTACTGGTAGAGTAAAGGTAATTATTTTTGTTCGAAC	Willimsky G, et al. (1992): PE
cssRS	cssR	`3385562..3385633`	`-63:+9`	TCATCCTACATCTTCCTCGCTCTTTTTCTCTTCCTTTCTTCCCTTAACCATATCATAAACAAACATTGTGGG	Darmon E, et al. (2002): PE
cssRS	cssR	`3385660..3385716`	`-46:+11`	TATGAAAATTGCCTGCCGTATGTTAAAACTAGTTTATAATGACGTTGAAAGGATGTG	Darmon E, et al. (2002): PE
ctaA	ctaA	`1558988..1559035`	`-39:+9`	GGAATTGCCACAAAACACATATTCGCTTACACTTGGAACGTATATAAA	Paul S, et al. (2001): PE, in-vitro transcription assay
ctsR-mcsAB-clpC-radA-yacK	ctsR	`101366..101417`	`-43:+9`	CGAGAAAGTTGAAAATTCTCGAGAAACGGCTTATAGTAAGATTAAAGTCAAA	Kruger E, et al. (1996): NB PE
cydABCD	cydA	`3979382..3979429`	`-39:+9`	GGCTTTATTTTTGAAATGAATCGTTGTAAAGTACTTAATATGAACCAG	Winstedt L, et al. (1998): PE RG NB
cysHP-sat-cysC-ylnDEF	cysH	`1630064..1630118`	`-39:+16`	AGTCGGGTTGACTTATGTTAGAATTGTGCTAAAATTTACTACAAATCTAAAAACT	Mansilla MC, et al. (2000): NB DP
cysK	cysK	`81690..81738`	`-41:+8`	AAGTGATTGACAAAAAATTTTGAAATTGATAGATTATATACATAATACC	Van der Ploeg JR, et al. (2001): PE
dctSRP	dctP	`500081..500130`	`-43:+7`	TCATAAACTTCCCCAGACTGTATGAAAACGCTATCATTCTAGTAAGAAAG	Asai K, et al. (2000): PE
degSU	degU	`3645392..3645442`	`-44:+7`	GACAATAGATTCGAAAATAGGTCTTGGGACATTTATTATGATTAAGGTTCC	Yasumura A, et al. (2008): PE
degSU	degU	`3645307..3645356`	`-45:+5`	AAAAGGCATATTGACCGAATGCTAGAGTATATAGAACAATAATACAAGGA	Yasumura A, et al. (2008): PE
degQ	degQ	`3257288..3257355`	`-48:+20`	TTTGCATACTTTTCGGTGAAAAATGAGCCGAAAGCAGACACACTATTAGTAACAGATCAAATACCTAG	Yang M, et al. (1986): S1
degSU	degS	`3646643..3646709`	`-52:+15`	ATTCGTACAGTCTTTAGAATTTTTGTGCGTATTTTGGTATCATAAAGAGTAGATAGTATATAAAAAT	Msadek T, et al. (1990): PE
des	des	`2089325..2089372`	`-43:+5`	GTGTGCTACTACAAAAGACTTCTCTCATTAGCGTATACTGAACCGAGA	Aguilar PS, et al. (1999): PE HM
dhbACEBF	dhbA	`3292405..3292444`	`-39:+1`	ATATTTGACTGTCACATGACATTTGGATATGATTATTTTT	Rowland BM & Taber HW (1996): PE
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp	divIB	`1593567..1593631`	`-50:+15`	ATCGCTGATTCAAGTTCTGACTGAAGCTGTTCATATGATATACTGTAAGCAAACGACAAACGGCA	Harry EJ, et al. (1994): PE DB SDM RG DP NB
dnaAN	dnaA	`110..174`	`-47:+18`	TTGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGATTAC	Moriya S, et al. (1988): S1 Ogasawara N, et al. (1985): S1
lepA-hemN-hrcA-grpE-dnaKJ-yqeTUV	dnaJ	`2625933..2625985`	None	AAAGGAATTGAAAAATCATAATTCAAAATGATACAATCTAATTTATGTGAGAA	Homuth G, et al. (1997): NB
dppABCDE	dppA	`1360319..1360383`	`-46:+19`	TTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT	Slack FJ, et al. (1991): PE
deoR-dra-nupC-pdp	dra	`4052293..4052362`	`-58:+12`	ATTGAACAAAATTTCAATTACCAATTTACATATGTTCAAAAGTCGGTTATGCTAAAAAATATCTTAACAA	Saxild HH, et al. (1996): PE
drm-punA	drm	`2448467..2448525`	`-42:+17`	AATACATTGTCAACGGGAATGAAAACGGTTTATACTTGAGTTGTCAGACCTCTTAGCGA	Schuch R, et al. (1999): PE
drm-punA	drm	`2448449..2448495`	`-41:+6`	TATACTTGAGTTGTCAGACCTCTTAGCGATACAATAGACGTATAGAA	Schuch R, et al. (1999): PE
fabHAF	fabHA	`1208114..1208167`	`-40:+14`	AATATATTGCCATGTGAAAAAAAATAGGATAGAATTAGTACCTGATACTAATAA	Schujman GE, et al. (2003): PE
yfhQ-fabL-sspE	fabL	`936596..936643`	`-43:+5`	ACCTGGTATGGAATATTTCAGTGTTTTTCGGTAAAGTAAAACAAGTGT	Yamamoto H, et al. (1999): NB PE
yfhQ-fabL-sspE	fabL	`936868..936912`	`-39:+6`	TTGATTGGCCTTCTTCGTTCAAATAAGGCATAATTTGCTGAAAGG	Yamamoto H, et al. (1999): NB PE
fapR-plsX-fabDG	ylpC	`1661892..1661954`	`-45:+18`	ATCGTTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCTTAATTGTCCGGA	Schujman GE, et al. (2006): PE
fbp	fbp	`4127978..4128028`	`-46:+5`	GTTTTAATTGTCTCTAAAAGCAGTTATGCGGTACTATCATATAAAGGTCCA	Fujita Y, et al. (1998): PE
feuABC-ybbA	feuA	`183354..183406`	`-45:+8`	GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAA	Fuangthong M & Helmann JD (2003): PE
feuABC-ybbA	feuA	`183349..183408`	`-50:+10`	CAGGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAATAGTT	Gaballa A, et al. (2007): PE
fla-che	flgB	`1691170..1691216`	`-44:+3`	CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATATA	West JT, et al. (2000): PE DP, Western blot Estacio W, et al. (1998): PE
ftsAZ	ftsA	`1596400..1596464`	`-47:+18`	AAGCCACATTCATTGTATTGTTGTTCCGCAAATAATAGAATAGAAATGATCGAAATGTGAGGAGG	Gonzy-Treboul G, et al. (1992): PE RG Fukuchi K, et al. (2000): DP RG
ftsAZ	ftsA	`1596140..1596205`	`-48:+18`	CAATAAGTTTAGCTTTTCTGGGAGTCCATCTTGGTGTAGACTTGTATTTAGCAGGTATATTCGCAT	Gonzy-Treboul G, et al. (1992): PE RG Fukuchi K, et al. (2000): DP RG
ftsH	ftsH	`76912..76960`	`-42:+7`	ATTGTTTGTATTGGAATGATTTTCTATGGTACTATTGAACATAGTTGTG	Deuerling E, et al. (1995): PE
fur	fur	`2450309..2450356`	`-39:+9`	TATAGTTGGAACTCTGCGCGTATTTTGTTATAATGAGTCATGGAATGC	Fuangthong M, et al. (2002): PE HM
gapB-speD	gapB	`2968091..2968148`	`-48:+10`	TTATCAATATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAAC	Servant P, et al. (2005): PE
gabP	gabP	`686600..686648`	`-40:+9`	AATTTTCGACAAACTGTATATTTATGATAGAGTTTCAATTATCATAATA	Ferson AE, et al. (1996): PE HM
gabP	gabP	`686589..686638`	`-42:+8`	AAACTGTATATTTATGATAGAGTTTCAATTATCATAATATTCAGTAATGA	Ferson AE, et al. (1996): PE HM
gabR	gabR	`441505..441555`	`-45:+6`	TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAAGTACCA	Belitsky BR & Sonenshein AL (2002): PE
gabTD	gabT	`441504..441560`	`-39:+18`	TTGGTACTTTTCATCATACCAAAGAGAAGTCAGAATGATAAGAAAATACCGACAGGG	Belitsky BR & Sonenshein AL (2002): PE
galE	galE	`3990987..3991035`	`-41:+8`	AAATGGATGTGGACCGGTTCTAAACACTATATAATGAAAACAGGTCATT	Krispin O, et al. (1998): PE
gcaD-prs-ctc	gcaD	`56276..56340`	`-48:+17`	CATGAAGTCTCCTTGAAATCAGAAGATATTTAGGATATATTTTTCTATGGATAAAAGGGATATTG	Moran CP Jr, et al. (1982): RO, dinucleotide priming Henkin TM, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 p.63-67: SDM RG RO Whipple FW, et al. (1992): RO
ggaAB	ggaA	`3672468..3672552`	`-59:+26`	TGATGATTTACATTTTTAAAGAGCCTTAACTTTTATAGGAACATATGCTATTATTGTTTATTATTAATGGAACGTAAAAAATATG	Freymond P-Ph, et al. (2006): PE
glnRA	glnR	`1877886..1877951`	`-49:+17`	TCCTTACATCGTATTGACACATAATATAACATCACCTATAATGAAACTAAGTTAAGAAAAGGAGGA	Strauch MA, et al. (1988): RO
glpD	glpD	`1004814..1004877`	`-46:+18`	GCAGCTATGGCTTTTAAATAAAGTAATACTATGGTATAATGGTTACAAGTTAATAAGAACGGTC	Holmberg C & Rutberg B (1991): PE
glpFK	glpF	`1002307..1002371`	`-47:+18`	GACGGAAAGTGATTGACACCGCTTTCATGCACTGATACAATTGCACTAGGTTAATACATTGTGAT	Holmberg C, et al. (1990): PE
glpTQ	glpQ	`233919..233974`	`-46:+10`	AATAGTTTTCCAACACGCCGTTTACATCCGTTTTTTATTATGAAAGACAGGTAGTG	Antelmann H, et al. (2000): NB PE
glpTQ	glpT	`235466..235528`	`-45:+18`	GAAAATTACCCGTTTACATTCGCTCCGGACTATGATAATTTAAGAAAGCGCTATCATGATAAG	Nilsson RP, et al. (1994): S1
ybgJ-ybgH	ybgJ	`265250..265324`	`-55:+20`	AAAATGTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCCATTATACAGTAATTATACCTTCCGCTATTATGAAA	Satomura T, et al. (2005): PE
gltAB	gltA	`2014671..2014735`	`-47:+18`	CTAAATTATATATTGTTTATATCGTTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTAT	Bohannon DE, et al. (1989): S1 Belitsky BR & Sonenshein AL (1997): PE
gltR	gltR	`2725741..2725799`	`-50:+9`	TCTAAGCTTTAGTTTACATGAAGCTCTGCTATCATATATAATTCAAAATTAAGATGGAA	Belitsky BR & Sonenshein AL (1997): PE
gltC	gltC	`2014693..2014755`	`-46:+17`	TCATTGTAGGTTTTCAAAACGATATAAACAATATATAATTTAGATCAAAAGAATCTCAAAATG	Bohannon DE, et al. (1989): S1
gltX-cysES-yazC-yacOP	gltX	`110951..111013`	`-52:+11`	GGCTAACTTGTTTTGATGCCGGGTCTATTTGGTGGTAGAATAGATTCATACATTTTTGCCTGA	Gagnon Y, et al. (1994): S1
glyA	glyA	`3790476..3790521`	`-41:+5`	ATCTTTTACATCGGCCTTAAAAACCATGTACAATAGTGATGGTAAA	Saxild HH, et al. (2001): PE RG
gntRKPZ	gntR	`4113336..4113398`	`-47:+16`	ATGAAAGTGTTTGCATAAAAGAAATATTCACGTTATCATACTTGTATACAAGTATACTCCTTG	Fujita Y, et al. (1986): S1
gntRKPZ	gntZ	`4117012..4117079`	`-42:+26`	CGTTGCTGGACTGGGATTCATTTTATTGTTAAGTTTAGTTGTATGAAATTAAGAAGGAGCTGTAACAC	Fujita Y, et al. (1986): S1
groESL	groES	`649794..649854`	`-43:+18`	CTTATCACTTGAAATTGGAAGGGAGATTCTTTATTATAAGAATTGTGTTAGCACTCTTTAG	Li M, et al. (1992): PE
gtaB	gtaB	`3665509..3665555`	`-40:+7`	AAAGCTTGTTTAAAAATGGTTTATCCGATATCATAAAAATGTGTAAA	Varon D, et al. (1993): PE
guaA	guaA	`692563..692626`	`-46:+18`	AGAAGATGGTCTTGACCGCTTATCGACGTGTTGTTAGAATTAGTGAATATTATCGGAGTCTGGG	Mantsala P, et al. (1992): PE
guaD	guaD	`1383164..1383212`	`-41:+8`	TTAAGAATGTTCTTTGCATTCTTTTCGGCTATACTAATAACACTCTATT	Nygaaard P, et al. (2000): PE HM
gudB	gudB	`2403390..2403439`	`-43:+7`	TTTATTCTATGCACAGATCATATGAAGGTGTATACTATTCTCTGAAAGGG	Belitsky BR & Sonenshein AL (1998): PE
gutBP	gutB	`667356..667419`	`-46:+18`	GCAGGAAAGGCTGTTGAACGTGTTAAAAAGCAGATAAAATGGGGGCAGTAACAGAGAAAACAAA	Ye R, et al. (1994): PE SDM
gyrA	gyrA	`6871..6934`	`-45:+19`	AGCAATTTAATGTGTATAATCATAAGTTTATTGATATAATGGAGAATAGTGAAATCGTATTGAA	Ogasawara N, et al. (1985): S1
hbs	hbs	`2385985..2386042`	`-40:+18`	AATGCTTGATATGGCTTTTTATATGTGTTACTCTACATACAGAAATTCTTCACTTTGT	Micka B, et al. (1991): PE NB Micka B & Marahiel MA (1992): PE NB Fernandez S & Alonso JC (1999): RG PE
hbs	hbs	`2386024..2386076`	`-42:+11`	TAAATCCTTGACGAGCAAGGGATTGACGCTTTAAAATGCTTGATATGGCTTTT	Fernandez S & Alonso JC (1999): RG PE
hemAXCDBL	hemA	`2879182..2879249`	None	TTTTAAAATCTGTTCACATTTTGTGAAAGAAACTATGTTATAATTATTATAAATAATGAGTTCTATGT	Hansson M, et al. (1991): S1
hemZ	hemZ	`1057609..1057654`	`-40:+6`	CCGGATTGATTTTAGCAGTTTATTTCTGTACACTAAAGAAAGTTTT	Homuth G, et al. (1999): PE NB
lepA-hemN-hrcA-grpE-dnaKJ-yqeTUV	hrcA	`2629665..2629731`	`-49:+18`	TGGGTGAGTTATAATTGACATTTTTCTTGTGGTTTGATACTTTTGTTATAGAATTAGCACTCGCTTA	Wetzstein M, et al. (1992): PE NB Homuth G, et al. (1997): NB
htpG	htpG	`4091342..4091387`	`-41:+5`	ATCTAATTGACAATTGTCATCTTATGTGATAAATAGATGCTGAAAA	Schulz A, et al. (1997): PE NB
htrA	htrA	`1359339..1359389`	`-44:+7`	TAATCTTTTCATTTTTATCCCACAGTTTTTGTTTATGATAAACTCAAGTCA	Noone D, et al. (2000): PE RG
hut	hutP	`4041405..4041467`	`-46:+17`	AAAAAACCTTTTGACTTCTGCTGCTGAACCAATTAATATAATACTCAGTTAATAGTTATCAGA	Wray LV Jr, et al. (1994): PE
citZ-icd-mdh	icd	`2981052..2981114`	`-45:+18`	GCCTCTTGTTCAGACATCAAAATTGGGTTACACTTTAAATTGAATGTTAGGAAAAATCATTTT	Jin S, et al. (1994): PE
ilvBHC-leuABCD	ilvB	`2897436..2897499`	`-45:+19`	AAAAAATGCTGTTGACACTGCGTCCAAAGCGGCGTAATATGAGTTCAACAAAAGATAAATGCAA	Grandoni JA, et al. (1992): PE SDM RG
infC-rpmI-rplT-ysdA	infC	`2953549..2953587`	`-37:+2`	CTTGACTAAAGATCCGGTATTGTGTAGAATAGTTATTGA	Choonee N, et al. (2007): PE
iolRS	iolR	`4084731..4084774`	`-39:+5`	CTATTGATTAACTTTTGGTTTTTATTATATATTTATGTTACGTA	Yoshida KI, et al. (1997): PE
ispA	ispA	`1387019..1387075`	`-47:+10`	CAAATGGCTCTGTCCGAGCGCTTGCTTTTTTCATATAATATGAGGCAACACCCTTGA	Koide Y, et al. (1986): S1
ydjK	ydjK	`676113..676158`	`-41:+5`	TTTATATTGACTGAAAGCGTTTTTATAATTATGATAATATCAGATA	Yoshida K, et al. (2002): NB PE FT
kdgRKAT	kdgR	`2325678..2325725`	`-43:+5`	AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTGTAAC	Pujic P, et al. (1998): PE
kinB-kapB	kinB	`3230002..3230045`	`-37:+7`	ATATTTTACTTCTAATATTTAGTGTTATAATAGATTCATATTTT	Trach KA & Hoch JA (1993): PE
kinC	kinC	`1518262..1518325`	`-46:+18`	TACATATTTTACTCAATTATTTGTCGAAGAATGGTACAATAAGTAGAGAAACACAAGCGGCAGG	LeDeaux JR, et al. (1995): PE Kobayashi K, et al. (1995): PE
ldh-lctP	ldh	`329676..329723`	`-39:+9`	TCTCTTGCAAAAGTTTGTGAAGTGTTGCACAATATAAATGTGAAATAC	Cruz Ramos H, e al. (2000): PE
lepA-hemN-hrcA-grpE-dnaKJ-yqeTUV	lepA	`2632774..2632843`	`-58:+12`	ACTTTTCTCTTTCTTGTTTTACATTGAATCTTTACAATCCTATTGATATAATCTAAGCTAGTGTATTTTG	Hippler B, et al. (1997): PE
licBCAH	licB	`3961916..3961961`	`-40:+6`	CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACAGC	Tobisch S, et al. (1997): PE NB
licR	licR	`3964002..3964043`	`-38:+4`	GTTCATTGACTTGCCATTCTCTCCATTATAGAATTTATATAC	Tobisch S, et al. (1997): PE NB
lmrAB	lmrA	`290733..290788`	`-48:+8`	CAATGAATTTTTCTTGACAATTGATGATTGAATCAAGATAATAGACCAGTCACTAT	Kumano M, et al. (2003): PE
lonA-ysxC	lonA	`2882872..2882932`	`-44:+17`	TCTTTTCCTTTTTCATATCAGAAAGAAAGGGTATACTACGAGGAGACTGTTTTATAGAAAA	Riethdorf S, et al. (1994): PE
lonA-ysxC	lonA	`2882800..2882863`	`-47:+17`	TGCCGTTTATTGTACAAGGATGAAAAAGTTGTATTATAATGGTTCATACTAAAGTCACGGAGGT	Riethdorf S, et al. (1994): PE
lrpC	lrpC	`475990..476054`	`-43:+22`	GAACTGTACTTGTCATTTACAAAAATACCCGAGATAATGTGTACAAAATCAAAAAAGAAGGATGT	Beloin C, et al. (2000): PE
lysC	lysC	`2911061..2911125`	`-48:+17`	GCAAAAATAATGTTGTCCTTTTAAATAAGATCTGATAAAATGTGAACTAATTTCATAGTTAGATC	Chen NY, et al. (1987): PE Chen NY, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 p.69-74: PE
lytABC	lytA	`3663124..3663169`	`-39:+7`	AGTTTCATTGTTTCTTAATTTTTCTTTAAAATATAAAATAGGTTGA	Lazarevic V, et al. (1992): PE
lytR	lytR	`3663218..3663261`	`-39:+5`	AGAGTTGTATTTATTGGAAATTTAACTCATAATGAAAGTAATTT	Lazarevic V, et al. (1992): PE Huang X & Helmann JD (1998): RG PE RO
maeN	maeN	`3244703..3244754`	`-40:+12`	TTAAAAAAATATGAAGTGTTAACGCTTTCTTGTAGACTGTAACAAACAATAC	Tanaka K, et al. (2003): PE
malA-yfiA-malP	malA	`889954..890000`	`-42:+5`	AACGTGTTACGGGACGAGCTATCTCATGGTATAAATGGAATTGTAAA	Yamamoto H, et al. (2001): PE NB RG
mecA	mecA	`1228967..1229031`	`-48:+17`	AAGGTTAAGATGTGGACGGAATGGGTAAAGTGTAGTAAAGTACAATTAATCGGGAGCTTAGATGT	Kong L, et al. (1993): PE
med-comZ	med	`1206498..1206548`	`-40:+11`	AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAAACCTT	Ogura M, et al. (1997): PE HM
med-comZ	med	`1206498..1206548`	`-46:+5`	AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAAACCTT	Ogura M, et al. (1997): PE HM
menBEC	menB	`3149688..3149751`	`-47:+17`	ACTCATTCACATAGAGAATAAAAGGAGGTCATCATATGGCTGAATGGAAAACAAAACGGACATA	Driscoll JR, et al. (1992): PE
menBEC	menE	`3148790..3148855`	`-50:+16`	GCTGTTTTCTTTTCAATACAGACATTTTACCTCGGAGATGATGACATGCTGACAGAACAGCCCAAC	Driscoll JR, et al. (1992): PE
menBEC	menF	`3153795..3153857`	`-45:+18`	GCTTTGTTTCTTTTTCATTTCTGAAATTAGGTTTATAATAGGTAAGGCAGGCCATTTGGACTG	Qin X, et al. (1996): PE
mmsA-iolBCDEF-idh-iolHI-fbaB	mmsA	`4084567..4084613`	`-39:+8`	ATGATTGACTTATGGGTATTATGCGATTAGAATATAACCAAGAAATG	Yoshida KI, et al. (1997): PE
mrgA	mrgA	`3383477..3383540`	`-60:+4`	CTAAATTATAATTATTATAATTTAGTATTGATTTTTATTTAGTATATGATATAATTAAGTCAAC	Fuangthong M & Helmann JD (2003): PE
mta	mta	`3764918..3764962`	`-41:+4`	GGGATTGACCCTAACGTTGCGTGATTGTTTACGATAAAAAAGAGG	Baranova NN, et al. (1999): RO
mtrAB	mtrA	`2385376..2385430`	None	CATTCACTTTGCTTTTAGCGGGGCATATGTGCTAGAATCGAAATTAAATGTATTC	Gollnick P, et al. (1990): HM SDS-PAGE RG
nadBCA	nadB	`2849482..2849544`	`-47:+16`	ATAAAAAACTCTTGAGTTTATTTTATCCTTGTGTAAATATAGGTGTCAAGACAGGTGTAAACA	Sun D & Setlow P (1993): PE
nadE	nadE	`338161..338206`	`-43:+3`	TCTCTTGTTCACAGTGAATGAAGACCTGTGCTATATTTAATAGGGA	Antelmann H, et al. (1997): PE
narGHJI	narG	`3829964..3830030`	`-52:+15`	AGTGTGTGACATAGTTCACAAGGAAACACGCTGTCTCTGTTTATAGTGAACTTAGCATCACCTGACT	Cruz Ramos H, et al. (1995): PE Reents H, et al. (2006): PE
nasA	nasA	`362854..362914`	`-43:+18`	CACATGTCTTTTCCAGAAAATAATGGTCCTATATCCTTGATTCAGAAAATGTAAAATAATG	Nakano MM, et al. (1995): PE
nasBCDEF	nasB	`362781..362846`	`-49:+17`	TTGTGACACGTTTAATGCGTTAACAATGCATTGTGACATAATTTTTAATAGGAGAAAACTTACGAG	Nakano MM, et al. (1995): PE
nfrA-ywcH	nfrA	`3912242..3912286`	`-41:+4`	TTTCACTTTTGAGATCACTTTTTTTCGGATATGATAAAAAGTGAT	Moch C, et al. (2000): PE
nifS-yrxA	nifS	`2849485..2849549`	`-47:+18`	TTACACCTGTCTTGACACCTATATTTACACAAGGATAAAATAAACTCAAGAGTTTTTTATGGAGA	Sun D & Setlow P (1993): PE
nrgAB	nrgA	`3756698..3756762`	`-47:+18`	TCTTACATGAAAATGTTTTATCATTCTTTTTTCTCTATAATGAAGAAATATAATAATTGCTTTTT	Wray LV Jr, et al. (1994): PE
ylxS-nusA-ylxRQ-infB-ylxP-rbfA	nusA	`1731553..1731616`	`-46:+18`	GCGTATATCCATTTGCAATAAAAATATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA	Shazand K, et al. (1993): PE
odhAB	odhA	`2111707..2111770`	`-48:+16`	TTTTTTACTATTTTGTGAACAATCAAGGTAGAATCAAATTGCAAACAGTGGTAAAATATCGTTG	Resnekov O, et al. (1992): PE
kinE-ogt	ogt	`1421278..1421336`	`-48:+11`	GGGGAACTGGACTTGGGCTTATGGTAAGCTATAAAATTATTGAAGAACATCAAGGCGAG	Morohoshi F, et al. (1989): PE
opuAABC	opuAA	`320909..320956`	`-43:+5`	GATGTTTATAAAGAAATGGTACAGAATAAAAGAGAATATGCTGTTTGT	Kemph B & Bremer E (1995): PE
opuAABC	opuAA	`320943..320994`	`-47:+5`	AATATGCTGTTTGTGTGGGAAGTTACATAAATGTTACGGTAATAAAGATTGC	Kemph B & Bremer E (1995): PE
opuBABCD	opuBA	`3463307..3463361`	`-42:+13`	GTAAACTTTTTATTTTATAAACTTTATTCTATAATGGGAAGCATTCAATTGTCTG	Kappes RM, et al. (1999): PE
opuE	opuE	`728429..728471`	`-40:+3`	CGCTTGAATGGCCGGGAATACTTTGTTAGGTTAAGTTACCAAG	Von Blohn C, et al. (1997): PE Spiegelhalter F & Bremer E (1998): NB RG DP SDM
pabBAC-sul-folBK-yazB-yacF-lysS	pabB	`82788..82837`	`-43:+7`	GAAATTCACTTTTTTCACTAACAACATTGCTTTACAATTAAAAACAAGTA	De Saizieu A, et al. (1997): PE RG NB
pckA	pckA	`3129432..3129505`	`-59:+15`	ACACACAAAAAACAATAAATAGTATAGACTATTTGAAAATATATGTTATACTAATTCACAATTAGCAAAACACA	Servant P, et al. (2005): PE
pbpD-yuxK	pbpD	`3233844..3233908`	`-47:+18`	CTAAATTTAACCTTCTCGTAATCTCAAAAGAATGGTACGATATGGCTAGAATTTAGGAGAAAAGA	Popham DL, et al. (1994): PE
pbpF	pbpF	`1083734..1083798`	`-49:+16`	GCCACCTCCTGCTTGCTAGTATATCAAAACAATGGTATAAGTTTCTATTGGCGAGTGCTTCGAAC	Popham DL, et al. (1993): PE
pdhABCD	pdhA	`1528191..1528266`	`-64:+12`	AAGGTTTTGGCAAACTGGGGATCGGCTAAAATATAATACGACTTACTGCTGATACTTTAGGGTACCCTAAGTTTGT	Gao H, et al. (2002): NB PE Hemila H, et al. (1990): NB
pdhABCD	pdhC	`1530383..1530460`	`-70:+8`	AGACGTTCTTGAAACAGCAAGAAAAGTGCTTGAATTTTAATCAAACTGCATAATCGAGAGGGAAGATGAACGTTTTCC	Gao H, et al. (2002): NB PE Hemila H, et al. (1990): NB
perR	perR	`944399..944444`	`-41:+5`	ATCAATTGACAAATTATCGTAGAAAGAGTTACACTAATTATAAACA	Fuangthong M, et al. (2002): PE HM
cggR-gapA-pgk-tpiA-pgm-eno	pgk	`3481628..3481685`	`-49:+9`	AAAGGACCTGACTTGGTTCTTTCGAATAGAAGCGCTATAATGAAAGCGGACAAGGGAA	Ludwig H, et al. (2001): PE
pheST	pheS	`2930786..2930828`	`-38:+5`	AGTGTTGCGCCAAGCGTTGGATTTCTCTATAATAGAACATAAT	Brakhage AA, et al. (1990): PE S1
phoA	phoA	`1018471..1018540`	`-53:+17`	TTGTTTACATGATCAACAGCCGCATTTAACAAAGTTTCCCTAACATGATAAACGGAATACATTAAAGGAG	Hulett FM, et al. (1994): PE
phoB-ydhF	phoB	`621519..621567`	`-45:+4`	AAATCGATTAATACTAGCTTAACAGTTTAAAAATATAATTGGGTTGTCA	Chesnut RS, et al. (1991): PE DP Abdel-Fattah WR, et al. (2005): RG Allenby NE, et al. (2005): DB AR
phoPR	phoP	`2978588..2978631`	`-40:+4`	CGAATTGTCGGAATGTCCTGCTTTCGCTAAAATAAAATCATGAA	Pragai Z, et al. (2004): NB PE Paul S, et al. (2004): PE, in-vitro reconstitution
phoPR	phoP	`2978566..2978610`	`-39:+6`	TTTCGCTAAAATAAAATCATGAAACATGTTAAGATGACATAAAAT	Pragai Z, et al. (2004): NB PE Paul S, et al. (2004): PE, in-vitro reconstitution
phoPR	phoP	`2978688..2978743`	`-46:+10`	ATTATCCTAATAAAAAGAGAGAAAGGCTTGCTTAATACAGCCTTTCTCTTTTTACT	Puri-Taneja A, et al. (2005): PE, in-vitro reconstitution
rapE-phrE	phrE	`2660205..2660265`	`-50:+10`	TCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGGAAAAATAGAGGAT	McQuade RS, et al. (2001): PE RG
rapI-phrI	phrI	`548269..548338`	`-56:+14`	AAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCG	McQuade RS, et al. (2001): PE RG
pmi	pmi	`3688683..3688742`	`-50:+10`	TCGAGGAAAAGGCTGAAACAAAGCTTCTTTTCGACGTGATATAATAGATAGGAAGCGTTT	Margot P, et al. (1994): PE SDS-PAGE
ppiB	ppiB	`2435806..2435869`	`-47:+17`	AGCCGCGACAAGGAGAGACAGGCTATAACCTATACATAATCTCCTTTGAAAATTAAAATAAAGA	Herrler M, et al. (1994): PE
pssA-ybfM-psd	pssA	`247514..247559`	None	GCGTCTTGTCCTTTTTATGCGGGGGGATAAAATAGTAAGGAACATG	Cao M & Helmann JD (2004): ROMA RG
pssA-ybfM-psd	pssA	`247574..247618`	None	CATTTTTCAAAAGGTAACAAATGTTGTATAATAATAGAATTTGAA	Cao M & Helmann JD (2004): ROMA RG
pst	pstS	`2581652..2581701`	`-43:+7`	TTCGGTTCAAACCCTTTTTACATAGAACCTTTACTCTATACGTGTAGGAC	Qi Y, at al. (1997): PE RG
pta	pta	`3866359..3866401`	`-38:+5`	CTGTTTGAATTTGATTGGAAGAAGAGTATGCTAGTAAAAGAAA	Shin BS, et al. (1999): PE
ptsGHI	ptsG	`1459303..1459348`	`-37:+9`	TGCTTGTCAGATGACAAGTACGGTTGTATGATATAATATTGTGAAG	Stulke J, et al. (1997): RG NB PE
ptsGHI	ptsH	`1456807..1456858`	`-45:+7`	TGTTGTTATTGAAAAATGAATATCCGCTATGCTACAATACAGCTTGGAAATT	Stulke J, et al. (1997): RG NB PE
pucABCDE	pucA	`3341052..3341098`	`-40:+7`	CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCATTTT	Beier L, et al. (2002): PE HM
yurHG	yurH	`3343692..3343738`	`-41:+6`	CTGTCAATGAACTATCATGTTGCTCCTTCTATAATGAAGTCACCATA	Beier L, et al. (2002): PE HM
pucH	pucH	`3328650..3328693`	`-39:+5`	TTGCTGATGTAATACGATCATAGTAGCAGTAAACTGTTGAAAAT	Beier L, et al. (2002): PE HM
ywoE	ywoE	`3753809..3753857`	`-43:+6`	ATAGCCAGTGTTATTGTCTGACTCTTCAGTTATATTAAGTGACATCTAA	Beier L, et al. (2002): PE HM
pucRJKLM	pucJ	`3330435..3330480`	`-40:+6`	ATCCAATGACACCCCTCGACCGGAACGATATTATGTTACTAAAGTT	Beier L, et al. (2002): PE HM
purA	purA	`4156752..4156815`	`-46:+18`	CGGATTTACAATTGACTTTCTGTTTCTTCACTGATAAACTTGATTTGTTTGAATAGAATCGTTT	Mantsala P, et al. (1992): PE
purEKBCSQLFMNHD	purE	`698325..698389`	`-45:+20`	TCGATAATATCGTTGACATTATCCATGTCCGTTGTTAAGATAAACATGAAATCAAAACACGACCT	Ebbole DJ & Zalkin H (1987): S1 PE
purT	purT	`243832..243873`	`-39:+3`	AAAAATTTATTTTTCAAATATTTCAGTTATAATGGTTTGGAA	Saxild HH, et al. (1995): PE
pyrRPBCAAABKDFE	pyrR	`1618114..1618157`	`-40:+4`	ACGGTTGACAGAGGGTTTCTTTTCTGAAATAATAAACGAAGCTG	Quinn CL, et al. (1991): NB PE
qcrABC	qcrA	`2365155..2365199`	`-39:+6`	TATATTGACCTTGCTGAGAGATTCATATATTATGAGGGTGTCTAG	Yu J, et al. (1995): PE HM
rapA-phrA	rapA	`1315788..1315856`	`-50:+19`	TGCGGTTATTTTGCGTTCTTCTTTTTCTTGTAAATATGATAAAATATGACATATCTCGGGTAATTCAAA	Mueller JP, et al. (1992): PE Jarmer H, et al. (2001): PE SDM HM
rapB	rapB	`3772158..3772211`	None	TTGTAAGAAAATTTAATTCCAAAGCCATACATTATGATAAAATATAACCAATTA	Jarmer H, et al. (2001): SDM HM
rapC-phrC	rapC	`428763..428802`	`-36:+4`	GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA	Lazazzera BA, et al. (1999): PE
rapD	rapD	`3744278..3744324`	`-41:+6`	CTGTCAATGAGAGCCGTCAAAAGTTATGATATGATAATTATAGATTT	Huang X & Helmann JD (1998): PE RO RG Jarmer H, et al. (2001): HM
rapG-phrG	rapG	`4140181..4140219`	`-34:+5`	TTTTACATAAAATAGAAAGAGGTGTTACTATCAGAATAA	Hayashi K, et al. (2006): PE
rapH-phrH	rapH	`750886..750931`	`-42:+4`	CTTCCTTCTATATTGTTTTCAAAATTTGGGATTGATAGAATATGAC	Hayashi K, et al. (2006): PE
rbsRKDACB	rbsR	`3701330..3701396`	`-49:+18`	TTTGATATTTTTATTGCTAACTTCGGATTGTTCATGATAATCTATCTATGTAAACGGTTACATAAAC	O'Reilly M, et al. (1994): PE
recA	recA	`1764569..1764633`	`-45:+20`	TTCGCTTTTTTCTTGGCAAATCCCTTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG	Cheo DL, et al. (1993): S1
resABCDE	resA	`2421371..2421425`	`-51:+4`	CTTCAAAAAGTAAGAAATGTGAAATGAACGTGCAATGATATAATTGAATGGATCT	Sun G, et al. (1996): PE
resABCDE	resD	`2417923..2417970`	`-43:+5`	ACACAGTTCTCAAACTTTCTCACGATTTGATAAAATGAAAGTAACAGA	Sun G, et al. (1996): PE
rpmH	rpmH	`4215404..4215475`	`-49:+23`	ACTAGTGAAGTTGACAATGAATAGGTAACGCAAATATAATAAGTAAGACTGTCTTTAACAGCTATTCCTCGA	Ogasawara N, et al. (1985): S1
rpmH	rpmH	`4215486..4215536`	`-41:+10`	AAATAAGGTTTCGAAAGTTGAAAAGGTATGGTATCCTATTATGGTTGCAAG	Ogasawara N, et al. (1985): S1
rocR	rocR	`4145668..4145716`	`-45:+4`	AAAATTCTTTTGCATATCCTCTCCGTTTTTTTATAAAATAGAAGCAATA	Gardan R, et al. (1995): PE
rpoB	rpoB	`121665..121709`	`-41:+4`	AAAGTTTGACTCGGTATTTTAACTATGTTAATATTGTAAAATGCC	Boor KJ, et al. (1995): PE SDM
ywjF-acdA-rpoE	rpoE	`3813138..3813201`	`-52:+12`	ATTAACGCTGTTAAGGGTAGCATATTCTGTTTTATTTTGTTTATAATGAGAGGTATGGTTTGTA	Lopez de Saro FJ, et al. (1999): PE
rpsD	rpsD	`3035501..3035564`	`-47:+17`	TGGAGGAATGGTTGACTTCAAAACAAATAAATTATATAATGACCTTTGTGTGAAATATTGCAGC	Grundy FJ, et al. (1990): PE
rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S	rrnA-16S	`30039..30105`	`-46:+21`	ATATTATGTATTGACTTAGACAACTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAACAGCTT	Ogasawara N, et al. (1983): S1
rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S	rrnA-16S	`30123..30181`	`-45:+14`	TAAAAAGTTGTTGACAGTAGCGGCGGTAAATGTTATGATAATAAAGTCGCTTAAACGAG	Ogasawara N, et al. (1983): S1
trnB	rrnB-16S	`3178892..3178956`	`-48:+17`	TTTAAAAAACTATTGCAATAAATAAATACAGGTGTTATATTATTAAACGTCGCTGATGCACAGCG	Stewart GC, et al. (1983): S1 Estrem ST, et al. (1999): ND
trnB	rrnB-16S	`3178799..3178861`	`-43:+20`	AAAAAAGTTGTTGACAAAAAAGAAGCTGAATGTTATATTAGTAAAGCTGCTTCATTGAGAAGT	Stewart GC, et al. (1983): S1
rrnD	rrnD-16S	`946379..946441`	None	AAAAAGGTGTTGACTCTGATTCTTGACCGTGTTATATTATTAAACGTCGCTGATGCGCTTCTG	Jarvis ED, et al. (1990): HM
rrnD	rrnD-16S	`946476..946538`	None	AAAAAAACATTTGACAAAAGAAAGTCAAAATGTTATATTAATAAAGTCGCTTCAACAAGAAGT	Jarvis ED, et al. (1990): HM
rrnO-16S-trnO-Ile-trnO-Ala-rrnO-23S-rrnO-5S	rrnO-16S	`9494..9556`	`-46:+17`	TGTCATAACCCTTTACAGTCATAAAAATTATGGTATAATCATTTCTGTTGTCTTTTTAAAGAC	Ogasawara N, et al. (1983): S1
rrnO-16S-trnO-Ile-trnO-Ala-rrnO-23S-rrnO-5S	rrnO-16S	`9592..9654`	`-45:+18`	CAAAAAAGTATTGACCTAGTTAACTAAAAATGTTACTATTAAGTAGTCGCTTTGAGAGAAGCA	Ogasawara N, et al. (1983): S1
rsbRSTUVW-sigB-rsbX	rsbR	`519317..519382`	`-45:+21`	AGAGCAACTTTTTTTGTTTTCAAAAAACATAAACGATATAATAGTGAAATAACGAAAAAATATGTT	Wise AA, et al. (1995): PE
sacB-yveBA	sacB	`3535769..3535823`	`-44:+11`	ATAGACCAGTTGCAATCCAAACGAGAGTCTAATAGAATGAGGTCGAAAAGTAAAT	Shimotsu H & Henner DJ (1986): S1 Steinmetz M & Aymerich S (1986): DP, levansucrase activity Tsukahara K, et al. (2008): PE (data not shown)
sacPA-ywdA	sacP	`3905167..3905217`	`-38:+13`	AAAAATAGTTGACGAAAACGCTATCATGATTTATGATGAAAGCGTATTCTT	Arnaud M, et al. (1996): RO
sacXY	sacX	`3941899..3941966`	`-48:+20`	CTTTTCATACTATTGCTATACAGCCATGAACAGCATAAAATGAACGTTATTACAGTTATCACCACATA	Crutz AM & Steinmetz M (1992): PE
sboAX-albABCDEFG	sboA	`3835968..3836017`	`-45:+5`	AATATATGTATTGAATTAGTAATTTGATAGTTTTAAGATAAAAGTACAAC	Zheng G, et al. (2000): PE
yaaJ-scr	scr	`26337..26389`	`-42:+11`	GTACGGTTGCAATTTTTAGGGGAAACAGATATACTTAAGTGTGCATCGTAATA	Struck JC, et al. (1989): S1
sda	sda	`2647330..2647376`	`-42:+5`	AGAACGATTGTTCTTATATGCATTTCATGGTAGATTAAAGATAACTT	Burkholder WF, et al. (2001): PE RG
yaaJ-scr	yaaJ	`25764..25807`	None	CAATCGACAGTCTCCTTTCCGTTTCAGTTATAGTTAATATGTAG	Struck JC, et al. (1990): RG HM
sdhCAB	sdhC	`2908810..2908871`	`-44:+18`	CGCGTTTTCTTGACGCCCTTTTGAGGGAGGAGTAAAATGAAATTGTCAATAAATCTTAATAA	Melin L, et al. (1989): PE
sdpRI	yvbA	`3467377..3467421`	`-37:+8`	GGGTTGTTTTTAAAAAAATTCAAGTTATAATGAAAATAATACATT	Ellermeier CD, et al. (2006): PE
secA-prfB	secA	`3630898..3630950`	`-42:+11`	CAAATTCTTTGGAAATAACAAAAGGTATGATATGATAATGAGAGGTATACATG	Herbort M, et al. (1999): PE RG, Western blotting
fla-che	sigD	`1716433..1716483`	`-44:+7`	ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGTATTAGG	Allmansberger R (1997): PE DP
sigH	sigH	`116530..116592`	`-45:+18`	TAGATTAAGTTGACGCTTTTTTGCCCAATACTGTATAATATTTCTATCTACGTGCGCCGGGGG	Weir J, et al. (1991): PE
sigM-yhdLK	sigM	`1030159..1030205`	`-43:+4`	CTCCGCACTATCTTTTGCGGCCATTTTTGGGTACTATATAGTAATGG	Horsburgh MJ & Moir A (1999): PE NB RG
sigX-rsiX	sigX	`2415259..2415302`	`-40:+4`	TTCCCTTCCAAATTCCAGTTACTCGTAATATAGTTGTAATGTAA	Huang X, et al. (1997): RO PE RG Huang X & Helmann JD (1998): PE
sinIR	sinI	`2552271..2552330`	`-53:+7`	ACCATTCGACATCATTCTCGTTTTTTTTGAGAAAATACGATTATAATAAAGGTATATTGG	Gaur NK, et al. (1988): PE HM Shafikhani SH, et al. (2002): PE
sinIR	sinI	`2552352..2552397`	`-41:+5`	TGGCAAATGACTTCCAGAGACTAATGAAGCATACAATAAGTCATGG	Gaur NK, et al. (1988): PE HM
sinIR	sinR	`2552589..2552648`	`-49:+11`	AGCCAGAAGTCATACCGTAAATCCTTTCTGAATGTGCTATAATATCACAAGGAAGGTGAT	Gaur NK, et al. (1988): PE HM Shafikhani SH, et al. (2002): PE
gapB-speD	speD	`2966927..2966972`	`-40:+6`	GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTGAA	Sekowska A, et al. (2000): PE NB
spo0A	spo0A	`2519010..2519067`	`-43:+15`	CCCTCTTCACTTCTCAGAATACATACGGTAAAATATACAAAAGAAGATTTTTCGACAA	Chibazakura T, et al. (1991): S1 Eymann C, et al. (2001): NB
spo0A	spo0A	`2519019..2519072`	`-42:+12`	TTGATCCCTCTTCACTTCTCAGAATACATACGGTAAAATATACAAAAGAAGATT	Predich M, et al. (1992): PE Eymann C, et al. (2001): NB
spo0B-obg	spo0B	`2854595..2854661`	`-50:+17`	GGAAAAACAATTGTTTTTCTAACAAAGCCTTCTCTGTTATAATTCATAATACACACTTATACAGACT	Trach K, et al. (1989): S1
spo0E	spo0E	`1430587..1430651`	`-49:+16`	AATGAAAATATGTTTACAAATAAAGTATAATCTGTAATAATGCACAATAACCCAATCAAACTTGT	Perego M, et al. (1991): PE
spo0F	spo0F	`3809979..3810042`	`-44:+20`	GAAAATGCTCAGAAAATGTCGTAAAGTAGACTATTATAATTAAAGGAAATAGGAAAATCAAACA	Trach K, et al. (1988): S1 Lewandoski M, et al. (1986): S1
spoIIE	spoIIE	`70458..70524`	`-51:+16`	TTACCTTCTTTTGACAAAATCCTATCTGTGCTTTCGCTATAATGACAGGCAACGAATATAACAGGTG	York K, et al. (1992): PE Guzman P, et al. (1988): S1 DP RG
spoIIGA-sigE-sigG	spoIIGA	`1603685..1603752`	`-49:+19`	TCAACATTAATTGACAGACTTTCCCACAGAGCTTGCTTTATACTTATGAAGCAAGAAGGGGAACAGCG	Kenney TJ, et al. (1989): PE
spoIIIE	spoIIIE	`1752152..1752195`	`-41:+3`	CCAACCCTTTTTTAAGGGCAAAATATGCTATAATAGGGGAATCC	Foulger D & Errington J (1989): PE RG
srfAA-srfAB-comS-srfAC-srfAD	srfAA	`376632..376694`	`-46:+17`	CCATTTTTCGGTGATAAAAACATTTTTTTCATTTAAACTGAACGGTAGAAAGATAAAAAATAT	Nakano MM, et al. (1991): PE
tagAB	tagA	`3681253..3681299`	`-42:+5`	TAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTAGCT	Mauel C, et al. (1995): PE
tagDEF	tagD	`3681086..3681131`	`-40:+6`	AGTACTTAACCTTTTTTAGGCGGTATGCTATAATTAATGATCAGTG	Mauel C, et al. (1995): PE
tetLB	tetL	`4189159..4189221`	`-45:+18`	AAAGTAAAAGTTTAATCCTTAGTCTATATATAATAAGATCATATCAATCAAATGTAGGGGGAG	Sakaguchi R, et al. (1988): S1
thrS	thrS	`2961475..2961536`	`-42:+20`	GCGATCGTGTTGATTTTTTGGATTGAACAATTTATAATACATAGGAGATTAAGAAAGACACA	Gendron N, et al. (1994): PE RO
thrZ-ywhA	thrZ	`3856975..3857012`	None	CTGATTGCGCTTTGTGGGAATATATAGTAAGATATAAA	Putzer H, et al. (1992): NB DP, Western blot
trePAR	treP	`850283..850324`	`-38:+4`	GTGTTGACTACCTGTATATACAGGAATACAATATGATTATAA	Schock F & Dahl MK (1996): PE
rrnD	trnD-Asn	`951403..951453`	`-39:+12`	AACACTTGATTTTCTCAAGAATACATAGTATAATGTTAAATGTCACTGAAA	Vold BS, et al. (1988): S1
rrnD	trnD-Leu2	`953138..953197`	`-47:+13`	TTTTTTGAAATACGTTGACACTTTATGAGATCCATGATATATTTATATTCGTCGGTTAGA	Vold BS, et al. (1988): S1
trpEDCFBA-hisC-tyrA-aroE	trpE	`2377612..2377666`	`-47:+8`	CCGATTTATCATTGACAAAAAATACTGAATTGTAATACGATAAGAACAGCTTAGA	Shimotsu H & Henner DJ (1984): S1 DP RG Shimotsu H, et al. (1986): S1
trxA	trxA	`2913349..2913405`	`-37:+20`	AAAATAGCGTGAACGAATGGGAGATGCTATACTAAAAATCATCATTTCACATTGGAG	Scharf C, et al. (1998): PE, 2D-gel
tyrS	tyrS	`3038151..3038211`	`-43:+18`	AGGCGGCGTTGACACAGGATTTTATTTATGTTAAAAATGATATAGCTTCATATGAAAAGGT	Henkin TM, et al. (1992): PE
ureABC	ureA	`3769940..3769985`	`-38:+8`	TTCTTTGAATTAATAGGCCTCTTCTATATAATGATGACATAAGTTG	Wray LV Jr, et al. (1997): PE RG
valS-folC	valS	`2869611..2869661`	`-43:+8`	AGATGATTGACGAATCAAAAACACTTTTACTATAATAAAGAACATAAATAA	Luo D, et al. (1997): PE NB
veg	veg	`52704..52765`	`-44:+18`	AAATTTTATTTGACAAAAATGGGCTCGTGTTGTACAATAAATGTAGTGAGGTGGATGCAATG	Whipple FW, et al. (1992): RO FT Le Grice SF & Sonenshein AL (1982): FT NB Moran CP Jr, et al. (1982): RO, in-vitro transcription Fukushima T, et al. (2003): PE NB RG
wapA-yxxG	wapA	`4030580..4030623`	`-40:+4`	AAATATTGTAATGATATTTCAGTCTAGTTAAGATTATTGAGTAA	Dartois V, et al. (1998): PE RG
xpt-pbuX	xpt	`2320206..2320250`	`-40:+5`	CAGCCTATGCAAGAGATTAGAATCTTGATATAATTTATTACAATA	Christiansen LC, et al. (1997): PE HM
xsa	xsa	`2915239..2915285`	`-38:+9`	GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAGCGC	Raposo MP, et al. (2004): RG PE
xylAB	xylA	`1891760..1891821`	`-44:+18`	CTAAAAAAAATATTGAAAATACTGACGAGGTTATATAAGATGAAAATAAGTTAGTTTGTTTA	Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1 Gartner D, et al. (1988): S1
xynA	xynA	`2055328..2055387`	`-49:+11`	ATTACAAATACTTTTAATATTTGCTCATGAATTCGTGGTATTATACTGAAGGGGACGATC	Allmansberger R (1996): PE NB
xynPB	xynP	`1886984..1887041`	`-47:+11`	CTGAAAAAGATGTTGAAAAAGTCGAAAGGATTTTATAATATTAAGTCAAGTTAGTTTG	Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1 Galinier A, et al. (1999): PE DP
yaaA-recF-yaaB-gyrB	yaaA	`3139..3190`	`-41:+11`	CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGATATTTG	Ogasawara N, et al. (1985): S1
yaaA-recF-yaaB-gyrB	yaaB	`3599..3668`	`-51:+19`	TCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAA	Ogasawara N, et al. (1985): S1
skf	ybcO	`213824..213891`	`-64:+4`	AATTTTTAGGATAATATACAAAATCCCCCTTACTTCGACAATTGCAATCTGGTATTATCGTATCGCAT	Chen G, et al. (2006): PE
yccC	yccC	`290848..290893`	`-40:+6`	GATCTTTTGACTGAATAGATAAAATGTACAATGATTAATCATCATA	Fisher SH & Wray LV Jr (2002): PE
ycdHI-yceA	ycdH	`308229..308305`	`-43:+34`	ATTTATTCTTGCAAAACGTAATGACTTCGGTTTATTATGATATAGGATTACAAAATCGTTATCATTTTGATTTAAAG	Gaballa A, et al. (2002): PE
yceCDEFGH	yceC	`312022..312068`	`-45:+2`	TCGTCAATTATTCTTAACTTTTACGAAACTTTGATATAATAACAAAC	Cao M, et al. (2002): PE
yciABC	yciA	`364181..364245`	`-40:+25`	TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAATTATTACGATTTGTTAGTGAG	Gaballa A, et al. (2002): PE
yciABC	yciC	`365752..365827`	`-50:+20`	TGAATTGAAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAATCGTAACAATTACGTTTTATGATAAATG	Gaballa A, et al. (2002): PE Gabriel, S.E., et al. (2008): PE
rtpA-ycbK	yczA	`276758..276802`	`-40:+5`	AGAATTGACTTCGTTTCATGAACCGAGTATTATAAACTCTACAAA	Sarsero JP, et al. (2000): PE
ydfK	ydfK	`594120..594164`	`-41:+4`	TCCCTTGACTCTCTACTAACTAGAGGGTTTATTTTTTATGCAGGA	Baranova NN, et al. (1999): RO
yfkJIH	yfkJ	`861909..861960`	`-44:+8`	GACATCAGTTGAAAAGAAAATGAACATCCTACTAAGATATTCATGAAGGTTT	Price CW, et al. (2001): RACE-PCR
yfmPO	yfmP	`812075..812120`	`-41:+5`	TTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGAAA	Gaballa A, et al. (2002): PE
yhaG	yhaG	`1075228..1075288`	`-42:+19`	AAAGTCTGGCTATGCAAACCGTCCGTTTGGTATACTGTTTGCATAACACATTCTGTAAAGC	Sarsero JP, et al. (2000): PE
yhfL	yhfL	`1100888..1100969`	`-38:+44`	GCTCTTGAGTGTTTTTTTCTGTTTCTCTATAATGGAGAAGAAAGCTTGGCTTCAATAATGAATGACTATTCATTCACTTAAG	Matsuoka H, et al. (2006): PE NB
yjcIJ	yjcI	`1258242..1258288`	`-40:+7`	AAGTGTTGAAATAAACTGTGAATTGCGCTAATATAAAACAATCAGAA	Auger S, et al. (2002): PE
uxaC-yjmBCD-uxuA-yjmF-exuTR-uxaBA	uxaC	`1300358..1300405`	`-39:+9`	GAGATTGATCCCAAAGGAATATAAAGGTAAAATAAAAACAAATCAAAA	Mekjian KR, et al. (1999): PE SDM RG
yklA	yklA	`1380901..1380956`	`-50:+6`	TTTATACGCGAAAAATTGACATTTCAAATTTAATTGTGTACAATTTAATTGTATAA	Volker U, et al. (1998): PE HM
ykzB-ykoL	ykoL	`1398114..1398157`	`-39:+5`	ATTCATACCACGTTCATTTAAAAAGAGTATCTTTTGTATAGGAT	Robichon D, et al. (2000): NB PE
ykuFG	ykuF	`1477998..1478060`	`-36:+27`	TGTGCTGACAGAGGCAGGGATATAATGATAGAATATTATTGAATGAATAATCATTCACAATTG	Matsuoka H, et al. (2006): PE NB
ykuNOP	ykuN	`1486953..1487001`	`-44:+5`	ATTTATCTGTTGACAATGAAAATCATTATCATTTAAAGTGATACATATG	Baichoo N, et al. (2002): HM PE
ykvW	ykvW	`1451226..1451269`	`-38:+6`	ATAATTGAAATTCTCTTCGTGCGTGCTATAATAAAGGAAGACAT	Gaballa A & Helmann JD (2002): PE HB
ylaABCD	ylaC	`1544046..1544096`	`-41:+10`	TTTATTGGCCATTTGGATGACGGTGTGGTTTTATTTTTAATGAAGCATAGG	Matsumoto T, et al. (2005): NB PE RACE-PCR
ylxM-ffh	ylxM	`1671746..1671807`	`-45:+17`	GATAAAAACTTGACAGTGTCATTAAAACCGTGTAAACTAAGTTATCGTAAAGGGATTTGACT	Honda K, et al. (1993): PE
nrdIEF-ymaB	ymaA	`1868523..1868577`	`-46:+9`	CGAATCTATATATTGTGTTTTTGCTAGAGGGTAGTATACTATATATAGTGTTAGT	Hartig E, et al. (2006): PE
ccdA-yneIJ	yneI	`1923955..1924001`	`-42:+5`	TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTAT	Schiott T & Hederstedt L (2000): PE NB
ccdA-yneIJ	yneJ	`1924405..1924451`	`-42:+5`	TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCAA	Schiott T & Hederstedt L (2000): PE NB
yocH	yocH	`2093798..2093846`	`-44:+5`	TTTTTGTTATTGATTTGACATTTACGTGTGTTACGATATCACCTGTTAG	Howell A, et al. (2003): PE
ypuE-ribDEAHT	ypuE	`2431629..2431680`	`-43:+9`	TATTTCATTGCGTACTTTAAAAAGGATCGCTATAATAACCAATAAGGACAAA	Mironov VN, et al. (1994): NB S1 Perkins JB, et al. (1999): RG NB
txpA	yqdB	`2678145..2678205`	`-50:+11`	TCATACTTTTTGAATGTGCTTTCCATATAATTCATGTATAATAGATTCTTGAAGCTACCTT	Silvaggi JM, et al. (2005): PE NB
yqxD-dnaG-sigA	yqxD	`2604022..2604068`	`-42:+5`	AACAATAGCATCTTTGTGAAGTTTGTATTATAATAAAAAATTGTGAT	Wang LF, et al. (1987): S1
yqxD-dnaG-sigA	yqxD	`2604050..2604095`	`-42:+4`	TGGCTGTGCCAAAAGGGAATAATGAAAAACAATAGCATCTTTGTGA	Wang LF, et al. (1987): S1
lcfA-ysiAB-etfBA	ysiA	`2918562..2918628`	`-43:+24`	GAATAAACTTGACAAACCTGAAAATCCTTCTTATCATGAAATTATGAATGAATAGTCATTCATTTCT	Matsuoka H, et al. (2006): PE NB
ytkD	ytkD	`3135487..3135531`	`-40:+5`	AAAGGCTTCCGAAGAAACGTAACTGTGGTATGATGTATGGAAGAT	Ramirez MI, et al. (2004): PE NB RT-PCR
ytrABCDEF	ytrA	`3119478..3119524`	`-41:+6`	AAAGGATTGACTTTGTGAGTCAAAGTATTTATTGTATTAAGTGTACT	Yoshida KI, et al. (2000): NB PE
yusMLKJ	yusL	`3372410..3372502`	`-38:+55`	CTATTGAAGTCGAACCGGAAATCTTTTAAGATGAAAGAAGAAACGGGTTTCATTTTTTTTAGTCAAAAAATGAATGACTATTCATTCAATGTT	Matsuoka H, et al. (2006): PE NB
yuxH	yuxH	`3259283..3259348`	`-49:+17`	TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG	Weinrauch Y, et al. (1989): PE
eps	yveK	`3529906..3529955`	`-44:+6`	TTTTGCAATTTTTAAATAATAACGTTTTCTTTTATAATCCAATCATTAAC	Kearns DB, et al. (2005): PE
yvgRQ	yvgR	`3434196..3434240`	`-40:+5`	TATATTTTACTTAAGCCTAGTATTCCGGTAAAGTTCAATTAGATG	Guillouard I, et al. (2002): PE
ywbI-thiME	ywbI	`3933142..3933190`	`-40:+9`	TACTTATTGTACATAAGGTCTCTCTATAGGTAAAATATATATTAAGAAT	Zhang Y, et al. (1997): PE NB
ywcJ	ywcJ	`3905265..3905314`	`-41:+9`	TAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAA	Cruz Ramos H, et al. (1995): PE Reents H, et al. (2006): PE
ywfK	ywfK	`3865251..3865293`	`-39:+4`	CCTTCTTTACCAAGACGGATGATATGAGTACAATAAAGAAAAC	Guillouard I, et al. (2002): PE
ywjF-acdA-rpoE	ywjF	`3816557..3816599`	`-37:+6`	TATTGACTGAACACTCATTCATTATTTATCATAAAGATAATCT	Matsuoka H, et al. (2006): PE NB
pyrG	pyrG	`3812472..3812524`	`-45:+8`	AAAACGATCTTGACTTTCATAGTCGAACTATGTAGTATGTATTTTGGGCTCTT	Meng Q, et al. (2004): PE
yqxM-sipW-tasA	yqxM	`2555304..2555349`	`-42:+4`	GGTGTTTTTAAATCTATAAATCGTTGATTATACTCTATTTGTGAAG	Chu F, et al. (2006): PE
ezrA	ezrA	`3031494..3031571`	`-58:+20`	GCACAAAAAGTTTTTGATTTCTGGTCAAAAAATGTTTGTTACATGGTATCATAATAACAATGAAAACGACAGTTTTTC	Chung KM, et al. (2004): PE RG
ezrA	ezrA	`3031469..3031543`	`-55:+20`	AAAATGTTTGTTACATGGTATCATAATAACAATGAAAACGACAGTTTTTCTCAATACATATCCTGAAATCTTTCT	Chung KM, et al. (2004): PE RG
yxaAB	yxaA	`4113254..4113304`	`-43:+8`	GCATGGTATGTATTTCCAGATCAATTATGGTACATTGGAGATCAATAGGTT	Nagorska K, et al. (2008): 5' RACE
yxeKLMNOPQ	yxeK	`4062215..4062281`	`-58:+9`	AGAAAAAATTAATCTTAACTCATTGACAAACGTCCAAGACAAAGGTACATTTTGATTTATTCATATT	Auger S (2003): Thesis: PE Even S, et al. (2006): PE
yrrT-mtn-yrhABC	yrrT	`2788537..2788605`	`-59:+10`	ATAAAATACACAAAGTGTTTTAGTACCTGCTTTTCAGAATATGTGGTATTATAGGAACTGTTCCATCAT	Auger S (2003): Thesis: PE Even S, et al. (2006): PE
yhcL	yhcL	`986906..986971`	`-53:+13`	GTTAAAATAATTCGCACTTGACCCATCGGAATTAGTGTAATATAGTAAATGAGAAAATTTGAAGGG	Auger S (2003): Thesis: PE Even S, et al. (2006): PE
ssuBACD-ygaN	ssuB	`961224..961285`	`-47:+15`	ATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTATTCAAACAAAAAAAC	Van der Ploeg JR, et al. (2001): PE
cymR-yrvO-trmU	cymR	`2812207..2812265`	`-49:+10`	CCTTCTGCCTCAATGAAAATTCGCTGAAGGTATGTTATAATAACAGTTGGTCTATAAGA	Choi SY, et al. (2006): PE
yjbCD	yjbD	`1227570..1227628`	`-49:+10`	TTTTCTTAGGATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCT	Leelakriangsak M, et al. (2007): PE
ntdABC-glcP	ntdA	`1129644..1129703`	`-50:+10`	CTTAAAAAAGTTGTTGACATGTTACCGATTTCAGAAACTAGGATAAATTTGTAATAAATT	Inaoka T, et al. (2004): PE
yvqIHGFEC	yvqI	`3398947..3399006`	`-50:+10`	AATCAATCTCTGATTCGTTTTGCATATCTTCCAACTTGTATAAGATGAAGACAAGGAAAA	Mascher T, et al. (2004): PE
yhcYZ-yhdA	yhcY	`1008592..1008651`	`-50:+10`	CATCCTACAAGTGAAGCAATGAAATACAAAAAACTGGTATAATCTTAAATACAAGATCAA	Jordan S, et al. (2006): PE
liaGFSR	liaG	`3397756..3397815`	`-50:+10`	CTTCCCTTCCGCACGTATCAATTCGCAAGCTTTTCCTTTATAATAGAATGAATGAGAAGG	Jordan S, et al. (2006): Data not shown
yydFGHIJ	yydF	`4127663..4127722`	`-50:+10`	TTTAGGTACAATATATTGACATGTATTGAATGATATAGAATAATTGGTTTATATTAGAAA	Butcher BG, et al. (2007): 5' RACE PCR
yvaB	yvaB	`3446149..3446208`	`-50:+10`	ATTCGAGATGTTTTACTTGAAAGTAAATTTCTTTGTCTCTATAATAAAGTCTAAGAGAGA	Towe S, et al. (2007): PE
mhqED	yodE	`2130016..2130075`	`-50:+10`	TCAAAACACATGGTTTGCATCCTTTTCAATAAAGGTTTAAAATAATAAATATCTTGAAAT	Towe S, et al. (2007): PE
mhqA	mhqA	`1352961..1353020`	`-50:+10`	GGTGAAGCTGATATGTTGACTTTCTCATGCGAATAAAATACTTTGTTATTAGAACAATAA	Towe S, et al. (2007): PE
mhqNOP	ydfN	`596270..596329`	`-50:+10`	AATTTTCAAAAACCTATTGACATGAGAAGATCTGTATTTTACTATTATCTCATATTCAAG	Towe S, et al. (2007): PE
lytE	lytE	`1018886..1018945`	`50:+10`	ACATGAAGTCAAGACTATTTCTGATGGGAATCTATCCTTATAATAGAAATCAATAAGATT	Ishikawa S, et al. (1998): PE
narK-fnr	fnr	`3832239..3832304`	`-48:+18`	TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGTTACAATAAACACACAACGTGACTTTCTTCG	Cruz Ramos H, et al. (1995): PE
hmp	hmp	`1372703..1372763`	`-50:+11`	GATTCATTTTAGATATATCTTTTATTCGTAAGATCATGTATTTTAAAGATATATTTTAAAT	LaCelle M, et al. (1996): PE DP RG Nakano MM, et al. (2006): PE
narK-fnr	narK	`3833538..3833597`	`-52:+8`	ACGTGTGATGTAATTCACAATCCTGTTTGGCTAGTTTTTGTATGATAAGACTGATTATTG	Cruz Ramos H, et al. (1995): PE
phoD	phoD	`283940..283989`	`-44:+6`	CACTTCTTCACAGTCGTTTAACAATGATTTCCTATAATGGAGACGATCAA	Eder S, et al. (1999): PE
rnc-smc-ftsY	rnc	ND	ND	ND	Kakeshita H, et al. (2000): NB
sipS	sipS	`2433609..2433657`	`-40:+9`	ACCAAGCTGAGAAACGAACCCAATTAGTATGTAATCAAAATTAAGTAAA	Bolhuis A, et al. (1996): PE NB RG
spoIIIJ-jag	spoIIIJ	`4214647..4214698`	`-44:+8`	GAAAAAGACACCATTTAAAACTGAAAGATGCTAAAATACATACAAGTATGCT	Errington J, et al. (1992): PE RG
tuaABCDEFGH	tuaA	`3658932..3658981`	`-44:+6`	ATACCATTTACATCCAATTAACATCCGTCTGCTAAACTGACTGGCATAGG	Soldo B, et al. (1999): PE
yqxD-dnaG-sigA	yqxD	`2603967..2604013`	`-43:+4`	TAATTTTAGGTTTAAGGATCGTGTGATACGAATAAACTATTATGGGT	Qi FX, et al. (1991): PE DB
ywkAB	ywkA	`3802235..3802294`	`-49:+11`	GTAATTTTCTTCTCTTGAATTTTGATTTTGACAGGCATACAATAGCTTACGTAATGTAAA	Doan T, et al. (2003): PE
mtnU	ykrU	`1425562..1425631`	`-55:+15`	CCTTCTAAAAAAATCTTGAAATGATAGTCCATCATCATATATGGTTAAATGAAAAAAGTAAAGAAAAATT	Sekowska A & Danchin A (2002): PE
mtnV	ykrV	`1425560..1425629`	`-47:+23`	CAAATTTTTCTTTACTTTTTTCATTTAACCATATATGATGATGGACTATCATTTCAAGATTTTTTTAGAA	Sekowska A & Danchin A (2002): PE
mtnKA	ykrT	`1424702..1424770`	`-49:+20`	TTAAAAAATATATTGACAACTAACTAAATTACCTGTTACCATGTTCATCAACTGATAAATTAGAATTGT	Sekowska A & Danchin A (2002): PE
mtnWXBD	ykrW	`1426807..1426882`	`-50:+26`	TACCCAAAAAAGCATTGACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTAT	Sekowska A & Danchin A (2002): PE
mtnWXBD	ykrW	`1426823..1426886`	`-53:+11`	GACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTATCAAG	Sekowska A & Danchin A (2002): PE
ytmIJKLMNO-ytnIJ-ribR-ytnLM	ytmI	`3008822..3008896`	`-54:+21`	AAGGTTTACTTTTTTTGATTAGTCAAAGATCAGAGTATGCTTTATAGTATAAACAATAAAAGCTTAGTAAACAAA	Burguiere P, et al. (2005): PE Erwin KN, et al. (2005): PE Solovieva IM, et al. (2004): NB
ytlI	ytlI	`3008806..3008879`	`-54:+20`	AAATATATAATTCCTATTTGTTTACTAAGCTTTTATTGTTTATACTATAAAGCATACTCTGATCTTTGACTAAT	Burguiere P, et al. (2005): PE
ytlI	ytlI	`3008806..3008879`	`-51:+23`	AAATATATAATTCCTATTTGTTTACTAAGCTTTTATTGTTTATACTATAAAGCATACTCTGATCTTTGACTAAT	Erwin KN, et al. (2005): PE
speE-speB	speE	`3849689..3849753`	`-53:+12`	CAGAACAGGACGCATCTTTACTTTTTCCCCGCCATCCTCTATACTTTTTCCTTAGGTGAAAATGA	Sekowska A, et al. (1998): PE
yflG-yflH	yflG	`840485..840570`	`-55:+31`	TTTTCCCAGGTCCGTGTGTTTCCTATTTTTAAGACAGTTGTGGTAAGCTTAATCTAGATTATTTAAAAAGAAAGCGGGAATGACAG	You C, et al. (2005): PE
ydfJ	ydfJ	`589631..589694`	`-50:+14`	CATGCCCGAATGTACGTTTTTTTCATTTCATTGTCAACTACAATGAGAAAGAATGTGATCAAGC	Serizawa M, et al. (2005): PE
bceAB	bceA	`3112105..3112166`	`-52:+10`	TTTTGTTCGCCGTATCGAAGGAAAAGCCCGGCATTCCTTTTTATAATGAGATTATCCAATAT	Ohki R, et al. (2003): PE
gmuBACDREFG	gmuB	`626541..626600`	`-50:+10`	TATTTTATAAAAGTATAGACATTTAAAATTAAATGACTATAATAATCAATGTAAGCGTTT	Sadaie Y, et al. (2008): PE
yrkO	yrkO	`2705283..2705342`	`-50:+10`	ATGATGACTCTTCATAAATTGTTAAGATTCGGTCTTTATATTTATCCATTGTAAGGCTCA	Ogura M, et al. (2008): PE
yrkPQR	yrkP	`2705171..2705230`	`-50:+10`	TTAAGATTTACGTAGTATCTTATAACGTACTTATTACTATGAACGATATATAGTAAGGAC	Ogura M, et al. (2008): PE
yclHI	yclI	`426420..426479`	`-50:+10`	AGAAATAGATTGTTCATATTTTTTTCATACCTTTGGACTACTATTAATTTATCAGCAAGG	Ogura M, et al. (2010): PE
ykcBC	ykcB	`1354217..1354276`	`-50:+10`	TATTAATAGTTTATTCATATTTGCTTGTTACACTATTTCAAAGTTAGACAAAAAGGAGTG	Ogura M, et al. (2010): PE
yngABC	yngA	`1946188..1946247`	`-50:+10`	GTTCATATTTTATTAATTGTTTATTCAACACTGTCCGCTATAGTAATCCATATCAACAAA	Ogura M, et al. (2010): PE
ywsC-ywtABC	ywsC	`3700655..3700714`	`-50:+10`	GTTACATAATGCCGATTGAGAATTCATAGTGATTCTATATACTGATGAATGAATTTACAA	Ohsawa T, et al. (2009): PE
thyB-dfrA-ypkP	thyB	`2297915..2297981`	`-55:+10`	ATAAAAAAATCATTTCTGGGTTCAGAAATGATTTTTTATTGTGTTACACTACTAGAAGACTACTTTT	Eckart RA, et al. (2009): ND
ywfBCDEFG	ywfB	`3874200..3874262`	`-53:+10`	ATCAATATTTTCAAAAAACATTGACAGTTCAATTTCCACTGGATAAAATTTACTTAAAATTTT	Inaoka T, et al. (2009): PE, GS
yhdG	yhdG	`1023173..1023232`	`-50:+10`	TTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGA	Belitsky BR, et al. (2011): PE
hpr	hpr	`1073745..1073804`	`-50:+10`	TATTAAAAAATTCTTACATTTTCATCTTTATTAATCTTTATTTTATTGGCATAATAGAGA	Abe, S et al. (2009): PE
yvcE	yvcE	`3575963..3576022`	`-50:+10`	GTAATAAAATTTATCGCTAATTTGTCGAAACTTGATGGTATAATGATTCTCGTACATAAG	Bisicchia P, et al. (2007): PE
ydjM	ydjM	`679315..679374`	`-50:+10`	GTAAGGATATTGAAATAAAAAATAGCTGGTTGATCGTGTATAATCTTCCTAGATGTTAAC	Bisicchia P, et al. (2007): PE
yoeB	yoeB	`2002553..2002612`	`-50:+10`	TTTATGCAAAAGTATTGTAATCTATCCGTAATTATTGTAACATTTGTAACATAAGAGAAA	Bisicchia P, et al. (2007): PE
yjeA	yjeA	`1280977..1281036`	`-50:+10`	TCCTTAAAAAGGATTGACATGAACTTCTAAATCTCATAGTATTACAAATGTGAAATAAAT	Bisicchia P, et al. (2007): PE
ycdA	ycdA	`300674..300733`	`-50:+10`	TAGGATGATGAACCTATTCAATATAAAAGCTAATAATCTTAAAATTAATTCCGTTGTAAC	Irnov I, et al. (2010): ND Ogura M, et al. (2012): ND
bpr	bpr	`1599148..1599207`	`-50:+10`	GAATGACATGAAACGACAATATCTGTAATTCAGATTGTCTACAGTTAATATACAGCGATG	Tsukahara K, et al (2008): PE
natAB	natA	`296352..296411`	`-50:+10`	TCGCGACAACTTTATCCAACTAATCCAGCTTTTCGTATATAGTCATTACTAGAAATAAAG	Ogura M, et al (2007): PE
yfiDE	yfiD	`897502..897561`	`-50:+10`	TGTAACAAAATTACTTGACGTAAACAAGTTATGTATATATACTAGCTTACATTAAGTAAG	Chi BK, et al (2010): PE
yetM	yetM	`790219..790278`	`-50:+10`	TTGGCTTGGAGATGATTGACAGCTTTTCTTGGGACATAGTAAGGTAATATAGTTAGGCGC	Hirooka K, et al. (2009): PE
yetL	yetL	`790174..790233`	`-50:+10`	TCATCTCCAAGCCAAGTTGCGTTATGGTTTTCCCTCCTTTATAATCGTGTCACAACGAAT	Hirooka K, et al. (2009): PE
yraB	yraB	`2755819..2755878`	`-50:+10`	ACTTGTTTTGAGCTTGACTTAAAGTTAACTTTAAGTGTTACCTTCACAACATACAGGATA	Nguyen TT, et al. (2009): 5' RACE
yraC	yraC	`2755903..2755962`	`-50:+10`	TATATTCGGGACTTGCCTTAAAGCACACTTTAAACTCTATACTTCTCCATGCACTAAAAA	Nguyen TT, et al. (2009): 5' RACE
yra	adhA	`2756189..2756248`	`-50:+10`	TTTTAAAAAACCCTTGCCTTAAAGCAGACTTTAAGGTTTATCGTTATGTTGAAGACACCA	Nguyen TT, et al. (2009): 5' RACE