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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ccdA-yneIJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ccdA | + | 1923234..1923941 | COG0785O | ccdA-BAC x0550-BAC | ||
| yneI | yoxH | + | 1924030..1924392 | COG2204T | ||
| yneJ | yoxI | + | 1924471..1924962 | COG4846O | yneJ-BAC |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Schiott T, et al. (1997), Schiott T & Hederstedt L (2000) |
| Comments: | Internal promoters in front of yneI and yneJ, leading to a 0.9 kb yneIJ transcript and a 0.5 kb yneJ transcript respectively. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+5 | 1923086..1923134 | TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATATAAG |
Schiott T & Hederstedt L (2000): PE NB |
| SigA | Promoter | -42:+5 | 1923955..1924001 | TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTAT |
Schiott T & Hederstedt L (2000): PE NB |
| SigA | Promoter | -42:+5 | 1924405..1924451 | TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCAA |
Schiott T & Hederstedt L (2000): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCTTTCCTCTTGTCAGGAAAGGTTTTTTATTTGAGAA >>>>>>>> <<<<<<<< |
yneJ |
|