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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | cotSA-cotS-ytxO |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| cotSA | ytbA | - | 3160761..3161894 | COG0438M | ||
| cotS | - | 3159691..3160746 | COG2334R | |||
| ytxO | ytbB | - | 3159258..3159689 |
| Operon evidence: | Northern blotting (2.7 kb transcript, Takamatsu et al.; 2.9 kb transcript, Abe et al.) |
|---|---|
| Reference: | Takamatsu H, et al. (1998), Abe A, et al. (1995), Lapidus A, et al. (1997), Genbank AF008220 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigK | Promoter | -42:+3 | 3161928..3161972 | CCCATTCCGCACAAGTTGGTTGTTCAGCCGTATCATGATTCTAAC |
Abe A, et al. (1995): NB PE Takamatsu H, et al. (1998): DB NB RG Kuwana R, et al. (2002): SDS-PAGE, RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGCAAGGCATAAAGTCACATTTATGCCTTTTTTTAAGTTCTC >>>>>>>> <<<<<<<< |
ytxO |
|