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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ctaBCDEFG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ctaB | + | 1559309..1560226 | COG0109O | ctaB-BAC ctaB-STA | ||
| ctaC | + | 1560466..1561536 | COG1622C | |||
| ctaD | + | 1561569..1563437 | COG0843C | ctaD-BAC | ||
| ctaE | + | 1563437..1564060 | COG1845C | |||
| ctaF | + | 1564063..1564395 | COG3125C | |||
| ctaG | + | 1564422..1565315 | COG3336S |
| Operon evidence: | RNAse protection mapping of the 3' terminus of the ctaB transcript; genome analysis |
|---|---|
| Reference: | Liu X & Taber HW (1998) |
| Comments: | The RNAse protection mapping of the 3' end showed that ctaB transcription ends at the end of the stem-loop downstream of ctaB. A longer transcript was also detected, which may be due to glucose-mediated readthrough at the ctaB terminator. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ResD | Positive | ND | 1559161..1559191 | TTGGTAAAATTCATAAAAAGTTCACAAATAA |
Liu X, et al. (1998): DB Zhang X & Hulett FM (2000): GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CCTTGACCTCTTGTTTAATCAGGCGGCTTTACTTTTAT >>>>>>> <<<<<<< |
ctaB | |||
| ACGATATCATAAAAGGTACAGCGAAATATGCTGTACCTTTTCGTTACATTTG >>>>>>>>> <<<<<<<<< |
ctaG |
|