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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | dacB-spmAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| dacB | - | 2423383..2424531 | COG1686M | |||
| spmA | ypuJ | - | 2422805..2423395 | COG2715R | ||
| spmB | ypuK | - | 2422264..2422800 | COG0700S |
| Operon evidence: | lacZ transcriptional fusions |
|---|---|
| Reference: | Popham DL, et al. (1995), Sorokin A, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -36:+7 | 2424552..2424594 | TTATTCATAACTGATGGACATGCGCATAAACTTGTACAAACCA |
Simpson EB, et al. (1994): PE Buchanan CE & Ling ML (1992): DB, immunoassay |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GTTACGTTATTATTTGGGAGCGCCTGAAAACGGCGTTTTTTTTAGATTTG >>>>>>>>>>>>> <<<<<<<<<<<< |
spmB |
|