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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | fabHAF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| fabHA | yjaX | + | 1208222..1209160 | COG0332I | fabH-BAC | |
| fabF | yjaY | + | 1209183..1210424 | COG0304IQ | fabF-BAC fabF-CLO fabF-STA fabF-STR |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Schujman GE, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+14 | 1208114..1208167 | AATATATTGCCATGTGAAAAAAAATAGGATAGAATTAGTACCTGATACTAATAA |
Schujman GE, et al. (2003): PE |
| YlpC | Negative | -40:+14 | 1208114..1208167 | AATATATTGCCATGTGAAAAAAAATAGGATAGAATTAGTACCTGATACTAATAA |
Schujman GE, et al. (2003): GS DP DB RG AR, immunoblotting |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATCAATCATAATCAAGCCAAACCGGCTGCCCTTAAAGGGTAGCCGGTTTTTTTTGTGTGCA >>>>>>>>>>> <<<<<<<<<<< |
fabF |
|