Regulated Operon: fapR-plsX-fabDG

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ylpC fapR + 1661967..1662533
COG2050Q ylpC-BAC  
plsX ylpD + 1662547..1663548
COG0416I plsX-BAC  
fabD ylpE + 1663567..1664520
COG0331I fabD-BAC fabD-STR  
fabG ylpF + 1664513..1665253
COG1028IQR x0651-BAC  

Operon evidence: Genome analysis
Reference: Schujman GE, et al. (2003)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -45:+18 1661892..1661954 ATCGTTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCTTAATTGTCCGGA Schujman GE, et al. (2006): PE
YlpC Negative -45:+18 1661892..1661954 ATCGTTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCTTAATTGTCCGGA Schujman GE, et al. (2003): DB RG AR GS
Schujman GE, et al. (2006): FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GGCGGAATGGTGATGTAAGTTTTTTCTCGAAAATTTCATCGTAGTTTCTCTAGTTTTTT
          >>>>>>>>>>>>>>    <<<<<<<<<<<<<
1665246..1665276
-7..23
-11.0
 fabG

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai