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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | gabR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| gabR | ycnF | - | 440025..441464 | COG1167KE |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GabR | Negative | ND | ND | ND |
Belitsky BR & Sonenshein AL (2002): PE SDM |
| SigA | Promoter | -45:+6 | 441505..441555 | TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAAGTACCA |
Belitsky BR & Sonenshein AL (2002): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATTTGGCAACCTGCACATCTGCACAGGTGCTGCACGTTTTTTCTTTTGCTT >>>>>>>>>> <<<<<<<<<<<<<< |
gabR |
|