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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | narGHJI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| narG | - | 3826259..3829945 | COG5013C | narG-BAC | ||
| narH | - | 3824806..3826269 | COG1140C | |||
| narJ | - | 3824226..3824780 | COG2180C | narJ-BAC | ||
| narI | - | 3823558..3824229 | COG2181C | narI-BAC |
| Operon evidence: | Northern blotting (6.4 kb transcript) |
|---|---|
| Reference: | Cruz Ramos H, et al. (1995), Reents H, et al. (2006), Genbank Z49884 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| FNR | Positive | -53:-24 | 3830001..3830030 | AGTGTGTGACATAGTTCACAAGGAAACACG |
Cruz Ramos H, et al. (1995): DB PE Reents H, et al. (2006): DB NB AR RG SDM |
| SigA | Promoter | -52:+15 | 3829964..3830030 | AGTGTGTGACATAGTTCACAAGGAAACACGCTGTCTCTGTTTATAGTGAACTTAGCATCACCTGACT |
Cruz Ramos H, et al. (1995): PE Reents H, et al. (2006): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAATCCCCCTTGCAAGAGGGGGTTTTTTCTGCCAAGG >>>>>>> <<<<<<< |
narI |
|