Regulated Operon: ntdABC-glcP

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ntdA
- 1128286..1129611
COG0399M  
ntdB
- 1127466..1128314
COG0561R  
ntdC
- 1126400..1127452
COG0673R  
glcP yhjI - 1125123..1126328
COG0738G  

Operon evidence: Northern blotting (3.2 kb and weak 4.5 kb transcripts)
Reference: Inaoka T, et al. (2007)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 1129644..1129703 CTTAAAAAAGTTGTTGACATGTTACCGATTTCAGAAACTAGGATAAATTTGTAATAAATT Inaoka T, et al. (2004): PE
YhjM Positive ND ND ND Inaoka T, et al. (2004): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGAAAAAGATAGAAACAAAGCGAAAAACACGCACCGCAGTGCGTGTTTTTTATTTAAAAA
                           >>>>>>>    <<<<<<<
1124970..1124987
136..153
-12.2
 glcP
GAGAGAAGTTACTAAAAAAGCAGGAATTTACTTTCCTGCTTTTTCATATAGGGG
                   >>>>>>>      <<<<<<<
1126352..1126371
29..48
-11.6
 ntdC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai