Regulated Operon: nucA-nin

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
nucA comI - 372154..372597
COG0008J nucA-BAC  
nin comJ - 371729..372127

 

Operon evidence: Genome analysis
Reference: Van Sinderen D, et al. (1995), Vosman B, et al. (1988)
Comments: BSORF also shows monocistronic nucA and nin transcripts. The second terminator was found inside the coding region of the downstream gene yckE.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive ND 372710..372739 CGTATTTTGCTGAAAACAAATATTTCGATC Van Sinderen D, et al. (1995): RG DB GS
ComK Positive ND 372686..372710 CTGCTAAAATTACGATTTCTGCAAT Van Sinderen D, et al. (1995): RG DB GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAACCCCTGAGAGAATAACTCTCAGGGACTCTTTATAAACTTTC
     >>>>>>>>>     <<<<<<<<<
371698..371720
9..31
-18.4
 nin
GTCCAATCCCAGTTGCTCGTTGTCAGATGCGGATTTTTTTTCGTTTTG
      >>>>>>>>>>     <<<<<<<<<<<<
371284..371310
419..445
-7.3
 nin

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai