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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ppiB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ppiB | cypBS | - | 2435360..2435791 | COG0652O | x0745-BAC |
| Operon evidence: | Northern blotting (0.5 kb transcript); upstream and downstream gene are on the opposite strand |
|---|---|
| Reference: | Herrler M, et al. (1994), Sorokin A, et al. (1993), Azevedo V, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -47:+17 | 2435806..2435869 | AGCCGCGACAAGGAGAGACAGGCTATAACCTATACATAATCTCCTTTGAAAATTAAAATAAAGA |
Herrler M, et al. (1994): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAGGCTTCCTCTTAGAGAGGAAGCTTTTTTTATTGGCCA >>>>>>>>> <<<<<<<<< |
ppiB |
|