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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | pspA-ydjGHI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| pspA | ydjF | + | 671245..671928 | COG1842KT | ||
| ydjG | + | 671994..673019 | COG1198L | |||
| ydjH | + | 673019..673783 | COG1512R | |||
| ydjI | + | 673814..674785 | COG4260S |
| Operon evidence: | Northern blotting (3.6 kb transcript) |
|---|---|
| Reference: | Serizawa M, et al. (2004), Wiegert T, et al. (2001), Kasahara Y, et al. (1997) |
| Comments: | The readthrough terminator downstream of pspA leads to a 0.7 kb transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigW | Promoter | -40:+5 | 671169..671213 | AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGGG |
Wiegert T, et al. (2001): AR PE DB RG Cao M, et al. (2002): ROMA AR RG PE RO Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAAGTCCGGAGTGATCAGCACTCGGGACTTTTTTATTTAGGAG >>>>>>>>>> <<<<<<<<<< |
ydjI | |||
| AGGAGGCCGCAGCTTTCGGCTGCGGCGTCATTTTATCATAA >>>>>>>>> <<<<<<<<< |
pspA |
|