Regulated Operon: sigM-yhdLK

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
sigM yhdM - 1029577..1030068
COG1595K sigM-BAC  
yhdL
- 1028511..1029587

 
yhdK
- 1028233..1028523

 

Operon evidence: Northern blotting (1.9 kb transcript)
Reference: Horsburgh MJ & Moir A (1999), Horsburgh MJ, et al. (2001), Genbank Y14082
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -43:+4 1030159..1030205 CTCCGCACTATCTTTTGCGGCCATTTTTGGGTACTATATAGTAATGG Horsburgh MJ & Moir A (1999): PE NB RG
SigM Promoter -40:+4 1030083..1030126 GTAATGTGCAACTTTAAACCTTTCTTATGCGTGTATAACATAGA Horsburgh MJ & Moir A (1999): PE DB NB RG
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAAGACGCCTTTTCAGGCGTCTTTTTTCGTTATACC
     >>>>>>>    <<<<<<<
1028211..1028228
5..22
-12.6
 yhdK

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai