Regulated Operon: tagDEF

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
tagD
- 3680581..3680970
COG0615MI tagD-STA  
tagE gtaD - 3678399..3680420
COG0438M  
tagF rodC - 3676159..3678399
COG1887M  

Operon evidence: Genome analysis
Reference: Honeyman AL & Stewart GC (1989), Rosenberg M & Court D (1979)
Comments: Honeyman & Stewart propose that the ATTTTATAAAAT inverted repeat in front of the terminator hairpin functions to slow the RNA polymerase prior to transcription termination.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
PhoP Negative -81:-12 3681114..3681174 GTCTGAGTGTAATTACATATTTTGGAATGTTTTTCTCCTCATGAGTACTTAACCTTTTTTA Liu W, et al. (1998): DB FT
PhoP Negative +122:+168 3680924..3680970 ATGAAAAAAGTTATCACATATGGAACTTTTGATTTACTGCATTGGGG Liu W, et al. (1998): DB FT
PhoP Negative +79:+106 3680986..3681013 TGTTTTTAATAGTGTTTAACATTAGGAA Liu W, et al. (1998): DB FT
SigA Promoter -40:+6 3681086..3681131 AGTACTTAACCTTTTTTAGGCGGTATGCTATAATTAATGATCAGTG Mauel C, et al. (1995): PE
YycF Positive -177:-147 3681238..3681268 CAAAGGATTAACATTATCTTTACATTAAATT Howell A, et al. (2003): HM FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TGTATAGCTGTCGATTTTTCGGCAGCTTTTTAGATACTTGTT
     >>>>>>>>>    <<<<<<<<<
3676113..3676134
25..46
-15.0
tagF

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai