Regulated Operon: xkdBCD-xtrA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
xkdB ykxB + 1322014..1322850

 
xkdC ykxC + 1322750..1323550
COG1484L  
xkdD ykxD + 1323802..1324152

 
xtrA
+ 1324149..1324355

 

Operon evidence: Genome analysis
Reference: McDonnell GE, et al. (1994)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Xre Negative ND 1321771..1321794 GATGATACAGAATGTATCGTTTAT McDonnell GE, et al. (1994): GS FT
Xre Negative ND 1321804..1321831 CATCCGATACAAAATGTATCAAAAAAGA McDonnell GE, et al. (1994): GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GCCTGCGGACACTGATCAACTGCACAGCATTTGTGCGTTGATTGGTGTCCGTTTTTTATTTGCCAA
     >>>>>>>>>>>>>>>>>>>>>     <<<<<<<<<<<<<<<<<<<<
1324391..1324436
36..81
-34.7
 xtrA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai