Regulated Operon: ybgJ-ybgH

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ybgJ glsA - 264191..265174
COG2066E  
ybgH glnT - 262720..264111

 

Operon evidence: Northern blotting (2.5 kb transcript)
Reference: Satomura T, et al. (2005)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YcbA Positive -56:-13 265282..265325 CAAAATGTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCCATT Satomura T, et al. (2005): GS FT
SigA Promoter -55:+20 265250..265324 AAAATGTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCCATTATACAGTAATTATACCTTCCGCTATTATGAAA Satomura T, et al. (2005): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CATAAGAAAAGGGTGTTCAGACATATGGGCTGAACACCTTTCTCTTTTTGCGT
           >>>>>>>>>         <<<<<<<<<
262699..262725
-5..21
-15.5
 ybgH

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai