Regulated Operon: ydcA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ydcA
- 515016..515615
COG0705R  

Operon evidence: upstream and downstream genes are transcribed in the opposite direction
Reference: Eichenberger P, et al. (2003), Genbank AB001488
Comments: No terminator listed in Genbank AB001488


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -40:+7 515643..515689 TACGTACTATTTAAATGGTTTGTCTCATAAACGTGTTACTATAGATA Eichenberger P, et al. (2003): AR, 5'-RACE-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAAATCCTAAAATGGTTTTCATTTTAGGATTTTGTCATCTTTTC
     >>>>>>>>>>>   <<<<<<<<<<<
514966..514990
26..50
-13.8
ydcA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai