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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ydcA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ydcA | - | 515016..515615 | COG0705R |
| Operon evidence: | upstream and downstream genes are transcribed in the opposite direction |
|---|---|
| Reference: | Eichenberger P, et al. (2003), Genbank AB001488 |
| Comments: | No terminator listed in Genbank AB001488 |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -40:+7 | 515643..515689 | TACGTACTATTTAAATGGTTTGTCTCATAAACGTGTTACTATAGATA |
Eichenberger P, et al. (2003): AR, 5'-RACE-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAATCCTAAAATGGTTTTCATTTTAGGATTTTGTCATCTTTTC >>>>>>>>>>> <<<<<<<<<<< |
ydcA |
|