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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yfhP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yfhP | - | 934457..935440 | COG1988R |
| Operon evidence: | Northern blotting (1.1 kb transcript) |
|---|---|
| Reference: | Yamamoto H, et al. (1999), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigK | Promoter | ND | 935567..935604 | GTTGTACACTAAGGGCACAGTACGATAATATGTTACAT |
Fujita M (1999): in-vitro transcription Yamamoto H, et al. (1999): NB RG |
| SigK | Promoter | ND | 935555..935593 | AGGGCACAGTACGATAATATGTTACATTAAATAGTAATA |
Fujita M (1999): in-vitro transcription Yamamoto H, et al. (1999): NB RG |
| unknown | Promoter | -40:+7 | 935581..935627 | CGCTTTTCTTTAGACTGTTTTTTGTTGTACACTAAGGGCACAGTACG |
Yamamoto H, et al. (1999): NB PE |
| YfhP | Negative | ND | ND | ND |
Yamamoto H, et al. (1999): PE RG (during exponential growth) |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTAAAGCTCGGCTCTATATAGAGCCGGGCTTTTTACGTCTTATA >>>>>>>>>> <<<<<<<<<< |
yfhP |
|