Regulated Operon: yfiDE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yfiD
+ 896923..897327

yfiD-BAC  
yfiE
+ 897345..898202

 

Operon evidence: Northern blotting (1.3kb)
Reference: Nguyen VD, et al. (2007), BSORF, Genbank D50543
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YvaP Negative -54:+14 897498..897566 AAAATGTAACAAAATTACTTGACGTAAACAAGTTATGTATATATACTAGCTTACATTAAGTAAGTGATA Chi BK, et al (2010): FT DB HM
YodB Negative -54:+14 897498..897566 AAAATGTAACAAAATTACTTGACGTAAACAAGTTATGTATATATACTAGCTTACATTAAGTAAGTGATA Chi BK, et al (2010): FT DB HM
SigA Promorter -50:+10 897502..897561 TGTAACAAAATTACTTGACGTAAACAAGTTATGTATATATACTAGCTTACATTAAGTAAG Chi BK, et al (2010): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGCAATCCCCTTGCCGAAATAACGGCAGGGGGATTTTTTATTTTTGTC
     >>>>>>>>>>>      <<<<<<<<<<<
898874..898901
672..699
-24.0
 yfiE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai