Regulated Operon: yfmCDEF

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yfmC
- 825787..826734
COG4594P  
yfmD
- 824714..825715
COG0609P  
yfmE
- 823716..824717
COG0609P  
yfmF
- 822903..823703
COG1120PH  

Operon evidence: Northern blotting
Reference: BSORF, Baichoo N, et al. (2002)
Comments: Northern blotting results in BSORF show the following transcripts in this region: yfmDEF, yfmCDEF, yfmC, yfmBC, yfmB


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Fur Negative ND 826742..826791 ATAGTGTTACATGTGATAATGATTCTCATTACTAAATCTGAAAAAAGGAA Baichoo N, et al. (2002): FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATGAGAAGCGAGGGGAATCCTTGCTTCTTCGTTTTTGCA
       >>>>>>>   <<<<<<<
825758..825774
13..29
-9.3
yfmC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai