Regulated Operon: yfmPO

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yfmP
+ 812140..812562
COG0789K  
yfmO
+ 812628..813818
COG2814G  

Operon evidence: Northern blotting
Reference: Gaballa A, et al. (2003), Genbank D86418
Comments: Northern blotting results in BSORF show a yfmP, a yfmO, and a yfmPO transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -41:+5 812075..812120 TTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGAAA Gaballa A, et al. (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CGAAAGACACTGCGCATATGCAGTGTCTTTTTATTCGTTATA
     >>>>>>>>      <<<<<<<<
813827..813848
9..30
-15.5
yfmO
TTAAACGCTATTTTTGTAGCGTTTCTTTTAATGGAA
     >>>>>>    <<<<<<
812576..812591
14..29
-7.3
yfmP

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai