Regulated Operon: yhcYZ-yhdA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yhcY
+ 1008668..1009807
COG4585T x0361-BAC  
yhcZ
+ 1009804..1010448
COG2197TK yhcZ-BAC  
yhdA
+ 1010445..1010969
COG0431R  

Operon evidence: search in progress
Reference: Jordan S, et al. (2006)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 1008592..1008651 CATCCTACAAGTGAAGCAATGAAATACAAAAAACTGGTATAATCTTAAATACAAGATCAA Jordan S, et al. (2006): PE
YvqC Positive -80:-51 1008562..1008591 TTTTTCTCATCCAAAAGTCTGAAAGAAAAT Jordan S, et al. (2006): DP, PE, RG, SDM
Kobayashi K, et al. (2001): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAGCAGGAAATCCCGGCGTCTAAACGCCGGGATTTGTTTATGTGAGA
            >>>>>>>>>    <<<<<<<<<
1010957..1010978
-12..9
-19.6
yhdA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai