Regulated Operon: ylxS-nusA-ylxRQ-infB-ylxP-rbfA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ylxS ymxA + 1731776..1732246
COG0779S ylxS-BAC  
nusA
+ 1732281..1733396
COG0195K nusA-BAC nusA-CLO nusA-LAB nusA-STA nusA-STR  
ylxR ymxB + 1733410..1733685
COG2740K ylxR-BAC ylxR-STR  
ylxQ ymxC + 1733687..1733989
COG1358J  
infB
+ 1734009..1736159
COG0532J infB-BAC infB-STR  
ylxP ymxD + 1736156..1736434
COG1550S  
rbfA ylxO + 1736451..1736804
COG0858J rbfA-BAC rbfA-STA x1021-STR  

Operon evidence: Northern blotting (5.2 kb transcript)
Reference: Shazand K, et al. (1993)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -46:+18 1731553..1731616 GCGTATATCCATTTGCAATAAAAATATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA Shazand K, et al. (1993): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAGAGAGGATAGGCGTATATCGTCTGTCCTCTTTCTTCGTTTATAA
     >>>>>>>>>>>     <<<<<<<<<<<
1736812..1736838
8..34
-17.7
rbfA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai